Evidence map›Paper›PMID 42927520›Full record

ArticleMolecular biology reports2026

Identification and experimental validation of candidate biomarkers for Parkinson's Disease through integrated bioinformatics, Mendelian randomization, and machine learning.

Xiaofei Guan, Wenmin Yu

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Article in Molecular biology reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

2 authors.

Xiaofei GuanSchool of Health Science and Engineering, University of Shanghai for Science and Technology, No. 516 Jungong Road, Shanghai, 200093, China.
Wenmin YuThe School of Basic Medical Science, Jiujiang University, No. 551 Qianjin East Road, Jiujiang, 332000, Jiangxi, China. 6140101@jju.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIdentifying reliable biomarkers and therapeutic targets is important for improving the early diagnosis and treatment of Parkinson's disease (PD). This study aimed to identify PD-related core genes, validate their expression, and explore potential therapeutic drugs.

methodsPD transcriptomic datasets were analyzed using differential expression analysis, Mendelian randomization, and machine learning. Candidate genes were validated using quantitative PCR (qPCR) in an MPTP-induced PD mouse model. Potential drugs were screened using the DSigDB database, followed by molecular docking and 100-ns molecular dynamics simulations to evaluate protein-ligand binding and stability.

resultsSeven potential core genes-AMIGO2, ATG7, CDK2AP2, CYP27A1, MT1X, NIPSNAP1, and TTC19-were identified. AMIGO2, ATG7, NIPSNAP1, and TTC19 were downregulated, whereas CDK2AP2, CYP27A1, and MT1X were upregulated. The results of animal experiments validated the abnormal expression of ATG7, NIPSNAP1, TTC19, CYP27A1, and MT1X. Drug screening identified 239 candidate compounds, five of which met the screening criteria. Molecular docking and molecular dynamics simulations provided computational support for relatively stable interactions between the top three drug-target complexes.

conclusionThis study identified several PD-related core genes and experimentally validated the expression of selected genes in an MPTP-induced PD mouse model. In addition, several potential therapeutic compounds were identified through computational analyses, providing candidates for further experimental investigation.

Indexed as

Computational BiologyParkinson DiseaseAnimalsBiomarkersDisease Models, AnimalGene Expression ProfilingHumansMachine LearningMaleMiceMolecular Docking SimulationMolecular Dynamics SimulationTranscriptomeBiomarkersbiomarkersdrug screeningmachine learningMendelian randomizationParkinson’s disease

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.