Evidence map›Paper›PMID 42912948›Full record

ArticleJournal of chemical information and modeling2026

Predicting Adsorbate-Solvent Interaction Energies in Zeolite Pores Using Convolutional Neural Networks with Attention Mechanisms.

Jiexin Shi, Xiuting Chen, Rachel B Getman

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Article in Journal of chemical information and modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Jiexin ShiWilliam G. Lowrie Department of Chemical and Biomolecular Engineering, The Ohio State University, Columbus, Ohio43210, United States.
Xiuting ChenWilliam G. Lowrie Department of Chemical and Biomolecular Engineering, The Ohio State University, Columbus, Ohio43210, United States.ORCID 0000-0001-7676-4515
Rachel B GetmanWilliam G. Lowrie Department of Chemical and Biomolecular Engineering, The Ohio State University, Columbus, Ohio43210, United States.ORCID 0000-0003-0755-0534

Funding

Basic Energy Sciences DE-SC0025579
6 · The paper itself

Abstract

Solvent effects play a critical role in determining reaction thermodynamics and kinetics in liquid-phase heterogeneous catalysis, particularly in confined nanoporous environments such as zeolite pores. However, accurate prediction of solvation thermodynamics remains computationally prohibitive due to the need for extensive first-principles calculations on diverse solvent configurations. In this work, we present an attention-enhanced three-dimensional convolutional neural network (3D-CNN) framework to predict solvation interaction energies (ΔEint) of adsorbates in Ti-faujasite (Ti-FAU) zeolite pores. Molecular dynamics (MD) snapshots of C1-C3 oxygenates in aqueous and water-methanol solvent environments are transformed into multichannel voxel grid representations that encode spatially resolved atomistic information. The 3D-CNN architecture incorporates separate adsorbate and solvent branches and employs convolutional block attention modules to dynamically prioritize spatial regions and feature channels relevant to adsorbate-solvent interactions. Trained on density functional theory (DFT)-derived interaction energies from a multiscale modeling workflow, the model achieves a mean absolute error of 0.08 eV for individual configurations and 0.04 eV for ensemble-averaged solvation energies, approaching DFT accuracy while substantially reducing computational cost. Cross-validation (CV) using simulation-system, solvent-composition, and pore-type splits demonstrates predictive performance on held-out systems within the represented chemical domain and across the solvent and pore conditions considered in this study. Analysis of spatial attention maps and feature attributions reveals that the model emphasizes adsorbate-proximal solvent structures and hydrogen-bonding interactions, consistent with physical intuition. This framework enables efficient and interpretable prediction of solvation interaction energies in confined systems and provides a scalable pathway for mapping structural information sampled from force-field-MD to DFT targets.

Indexed as

SolventsZeolitesAdsorptionConvolutional Neural NetworksDensity Functional TheoryMolecular Dynamics SimulationPorosityThermodynamicsWaterSolventsWaterZeolites

Identifiers

PMID42912948
PMCPMC13663866

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.