Evidence map›Paper›PMID 42911656›Full record

ArticleMicrobial genomics2026

UShER-TB: scalable, comprehensive, accessible phylogenomic analysis of

Lily M Karim, Francisco José Martínez-Martínez, Ash O'Farrell, Angie S Hinrichs, Theo Sanderson, Zamin Iqbal, Varvara K Kozyreva, John M Bell, Mariana G López, Iñaki Comas and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lily M KarimDepartment of Biomolecular Engineering, University of California, Santa Cruz, USA.
Francisco José Martínez-MartínezTuberculosis Genomics Unit, Instituto de Biomedicina de Valencia (IBV), CSIC, Valencia, Spain.
Ash O'FarrellGenomics Institute, University of California, Santa Cruz, USA.
Angie S HinrichsGenomics Institute, University of California, Santa Cruz, USA.
Theo SandersonDepartment of Infection Biology, London School of Hygiene and Tropical Medicine, London, UK.
Zamin IqbalMilner Centre for Evolution, University of Bath, Bath, UK.
Varvara K KozyrevaMicrobial Diseases Laboratory, Infectious Diseases Laboratories Division, Center for Laboratory Sciences, California Department of Public Health, Richmond, CA, USA.
John M BellMicrobial Diseases Laboratory, Infectious Diseases Laboratories Division, Center for Laboratory Sciences, California Department of Public Health, Richmond, CA, USA.
Mariana G LópezTuberculosis Genomics Unit, Instituto de Biomedicina de Valencia (IBV), CSIC, Valencia, Spain.
Iñaki ComasTuberculosis Genomics Unit, Instituto de Biomedicina de Valencia (IBV), CSIC, Valencia, Spain.
Russell Corbett-DetigDepartment of Biomolecular Engineering, University of California, Santa Cruz, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Genome, BacterialGenomicsMycobacterium tuberculosisPhylogenyTuberculosisComputational BiologyHumansbioinformaticscomputational biologyinfectious diseasephylogeneticstuberculosisworkflow

Identifiers

PMID42911656
PMCPMC13690021

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.