Evidence map›Paper›PMID 42909619›Full record

ArticleApplied microbiology and biotechnology2026

Comparative purification of a Salmonella bacteriophage for protein profiling.

Alinur Toleukhan, Akbope Abdykalyk, Aktoty Anarbekova, Azamat Abdimukhtar, Bekzat Yerzhigit, Nazym Syrym, Nadezhda Zinina, Sabira Alpysbayeva, Makhpal Sarmykova, Yeldos Serikbay and 8 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Applied microbiology and biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Alinur ToleukhanResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0009-0002-1906-746X
Akbope AbdykalykResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-1998-8798
Aktoty AnarbekovaResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-3884-4458
Azamat AbdimukhtarResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-4585-7476
Bekzat YerzhigitResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0009-0008-0681-0035
Nazym SyrymResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-4361-5676
Nadezhda ZininaResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0003-3536-5483
Sabira AlpysbayevaResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0009-0002-9839-6199
Makhpal SarmykovaResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-0650-7457
Yeldos SerikbayResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-9186-0529
Kali TileukhanovResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-5541-9146
Nurlan KozhabergenovResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0001-6299-9399
Bekbolat UsserbayevResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-4615-1328
Yeraly ShayakhmetovResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0002-4486-3188
Kuandyk ZhugunissovResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0003-4238-5116
Sergazy NurabayevResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan.ORCID http://orcid.org/0000-0003-0843-1983
Andrey ShestakovUlyanovsk State Agrarian University Named After P. A. Stolypin, Ulyanovsk, Russia.ORCID http://orcid.org/0009-0004-5138-2034
Bolat YespembetovResearch Institute for Biological Safety Problems, Gvardeyskiy, Kazakhstan. b.yespembetov@biosafety.kz.ORCID http://orcid.org/0000-0003-3312-4045

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salmonella enterica bacteriophages are increasingly studied for bacterial biocontrol and applied microbiology. However, reliable downstream characterization depends strongly on how the phage material is purified and concentrated. This study compared five preparation strategies for a Salmonella bacteriophage: sucrose density gradient centrifugation, cesium chloride gradient centrifugation, ultrafiltration followed by lyophilization, ultrafiltration followed by ammonium sulfate precipitation, and ultrafiltration followed by trichloroacetic acid precipitation. The preparations were assessed for infectious phage recovery, total protein concentration, SDS-PAGE protein profiles, an exploratory molecular weight-based comparison with a reference phage dataset, and targeted real-time PCR screening for selected virulence-associated determinants. Ultrafiltration followed by ammonium sulfate precipitation gave the highest infectious phage recovery among the infectivity-preserving workflows and produced a consistent eight-band SDS-PAGE profile. Trichloroacetic acid precipitation produced a similar banding pattern but was considered mainly a protein precipitation method because of its denaturing effect. Cesium chloride gradient centrifugation gave the most complex SDS-PAGE profile, while ultrafiltration followed by lyophilization gave the least resolved one. Several bands fell within the molecular-mass ranges reported for proteins of related Salmonella phages, but matching by molecular mass alone cannot identify the proteins, which would require LC-MS/MS. Targeted real-time PCR did not detect sopE, sspH1, sseI, or sopE2. Under the conditions tested, ultrafiltration followed by ammonium sulfate precipitation gave the highest infectious recovery and a consistent SDS-PAGE pattern; these results describe how the workflows behaved here rather than showing that one method is generally superior. KEY POINTS: • Five workflows were compared for Salmonella phage purification. • Ammonium sulfate precipitation gave the highest infectious recovery. • Selected virulence-associated genes were not detected by qPCR.

Indexed as

Salmonella entericaSalmonella PhagesViral ProteinsCentrifugation, Density GradientCesiumChemical PrecipitationChloridesElectrophoresis, Polyacrylamide GelFreeze DryingMolecular WeightReal-Time Polymerase Chain ReactionUltrafiltrationCesiumcesium chlorideChloridesViral ProteinsBacteriophage purificationMolecular safety screeningPhage recoverySalmonella bacteriophageSDS-PAGE profilingUltrafiltration

Identifiers

PMID42909619

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.