Evidence map›Paper›PMID 42909566›Full record

ArticleMarine biotechnology (New York, N.Y.)2026

Genome-wide DNA Methylation Difference Between Sexes in Juveniles and Epigenetic Regulation of Sexual Development in Intersex Crabs Eriocheir sinensis.

Yan-Qing Zhang, Xing-Lin Lai, Xin-Yu Liu, Jin-Xia Yang, Mei-Jun Tang, Xu-Gan Wu, Gao-Feng Qiu

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Article in Marine biotechnology (New York, N.Y.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

7 authors.

Yan-Qing ZhangKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture and Rural Affairs, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China.
Xing-Lin LaiKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture and Rural Affairs, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China.
Xin-Yu LiuKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture and Rural Affairs, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China.
Jin-Xia YangKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture and Rural Affairs, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China.
Mei-Jun TangKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture and Rural Affairs, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China.
Xu-Gan WuKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture and Rural Affairs, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China.
Gao-Feng QiuKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture and Rural Affairs, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China. gfqiu@shou.edu.cn.

Funding

National Key Research and Development Program of China 2018YFD0900201Shanghai Municipal Agricultural Commission 2025-02-08-00-12-F00050the program for Shanghai Collaborative Innovation Center for Cultivating Elite Breeds and Green-culture of Aquaculture animals 2021-KJ-02-12
6 · The paper itself

Abstract

Epigenetic regulation of sexual development is widely documented in model species, yet data for commercial invertebrates remain limited. Here, we used whole-genome bisulfite sequencing (WGBS) to profile genome-wide DNA methylation and identify differentially methylated regions (DMRs) between the female and male juveniles at stage III in the Chinese mitten crab Eriocheir sinensis. Global methylated cytosines accounted for approximately 1.44% and 1.45% of all cytosines in the female and male genomes, respectively. Among the CpG, CHG, and CHH contexts, CpG showed the highest mean methylation levels, at 8.15% in females and 8.08% in males. A total of 21,038 nominally significant DMRs were identified between sexes, with 11,557 (55%) hypermethylated DMRs in males. Notably, the methylation level of the ZW chromosome was the highest compared to the ZZ chromosome and the autosomes, suggesting sex-biased epigenetic modification within the ZW/ZZ sex determination system. On autosomes, the hypermethylated DMRs in females were mainly detected in the gene body regions of Sex lethal, Male-specific lethal 3, Feminization-1c, and Feminization-1a. On the ZW chromosome, 233 DMRs were hypermethylated in females, whereas 161 were hypermethylated in males. Furthermore, in the intersex crabs (ZW) bearing male first gonopods, the promoter of LOC113817324 exhibited intersex-specific hypermethylation in the ovary, whereas intronic methylation of the Serine/threonine-protein kinase (ATR) remained low, mirroring the pattern observed in normal male (ZZ) testes. These findings reveal sex- and intersex-associated DNA methylation patterns in E. sinensis and provide candidate epigenetic loci for further investigation of sexual development.

Indexed as

BrachyuraDNA MethylationEpigenesis, GeneticSexual DevelopmentAnimalsFemaleMaleSex ChromosomesDifferentially methylated regionsEriocheir sinensis, DNA methylationSex chromosomesSex differentiation

Identifiers

PMID42909566

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