Evidence map›Paper›PMID 42907755›Full record

ArticleBMC genomic data2026

Complete genome sequence of psychrotolerant Lacisediminihabitans sp. FW035 isolated from freshwater in Antarctica.

Minkyung Kim, Ahnna Cho, Minjeong Kwon, Yong-Joon Cho, Ok-Sun Kim

Abstract read
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Article in BMC genomic data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Minkyung KimDivision of Life Sciences, Korea Polar Research Institute, Incheon, 21990, Republic of Korea.
Ahnna ChoDivision of Life Sciences, Korea Polar Research Institute, Incheon, 21990, Republic of Korea.
Minjeong KwonDepartment of Molecular Bioscience, Kangwon National University, Chuncheon, 24341, Republic of Korea.
Yong-Joon ChoDepartment of Molecular Bioscience, Kangwon National University, Chuncheon, 24341, Republic of Korea.
Ok-Sun KimDivision of Life Sciences, Korea Polar Research Institute, Incheon, 21990, Republic of Korea. oskim@kopri.re.kr.ORCID 0000-0003-1217-4780

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesMicroorganisms inhabiting cold and oligotrophic aquatic environments experience persistent physiological stress, necessitating genomic characterization to understand their survival strategies. Psychrotolerant strains have evolved diverse metabolic adaptations, including secondary metabolite biosynthesis, which may contribute to environmental fitness and offer potential for low-temperature biotechnological applications. However, the genus Lacisediminihabitans remains poorly represented at the genomic level, limiting our understanding of its ecological roles and metabolic potential. To address this gap, we generated a high-quality complete genome of a psychrotolerant Lacisediminihabitans strain isolated from Antarctic freshwater. DATA DESCRIPTION: Lacisediminihabitans sp. FW035 grew at 2 - 25 °C with an optimum at 20 °C. The genome of strain FW035 is 3,842,169 bp in size with a G+C content of 66.4%, encoding 3,592 protein-coding genes. Genome analysis revealed a complete C5-C20 isoprenoid biosynthesis pathway and multiple biosynthetic gene clusters, including terpene-associated clusters with low similarity to previously characterized pathways. These features indicate the presence of biosynthetic potential distinct from previously characterized pathways, particularly terpene-associated clusters, and highlight the dataset as a resource for future comparative genomic and functional analyses.

Indexed as

ActinobacteriaFresh WaterGenome, BacterialAntarctic RegionsBase CompositionMultigene FamilyTerpenesWhole Genome SequencingTerpenesAntarcticaBiosynthetic gene clusterisoprenoidLacisediminihabitansMicrobacteriaceae

Identifiers

PMID42907755
PMCPMC13688941

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.