Evidence map›Paper›PMID 42907429›Full record

ArticleNature communications2026

Host-pathogen pyrimidine metabolism drives cystic fibrosis lung disease.

Gaurav Kumar Lohia, Ying-Tsun Chen, Samantha Chen, Ayesha Beg, Erin Theiller, Aomeng Cui, Ahmed M Moustafa, Sebastián A Riquelme

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Gaurav Kumar LohiaDivision of Infectious Diseases, Department of Pediatrics, Columbia University Medical Center, New York, NY, USA.ORCID 0000-0002-4186-621X
Ying-Tsun ChenDivision of Infectious Diseases, Department of Pediatrics, Columbia University Medical Center, New York, NY, USA.ORCID 0000-0002-2966-3153
Samantha ChenDivision of Infectious Diseases, Department of Pediatrics, Columbia University Medical Center, New York, NY, USA.
Ayesha BegDivision of Infectious Diseases, Department of Pediatrics, Columbia University Medical Center, New York, NY, USA.
Erin TheillerDivision of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Center for Microbial Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Aomeng CuiVagelos College of Physicians and Surgeons, Columbia University Irving Medical Center, New York, NY, USA.
Ahmed M MoustafaDivision of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Center for Microbial Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-9949-6936
Sebastián A RiquelmeDivision of Infectious Diseases, Department of Pediatrics, Columbia University Medical Center, New York, NY, USA. sr3302@cumc.columbia.edu.ORCID 0000-0002-8375-4320

Funding

Impact of nucleotide metabolism on bacterial clearanceR35GM146776 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Sebastian Alejandro Riquelme Colet · 2022 to 2026
$2.0M
Impact of Regulatory T Cells on Host Susceptibility to Pseudomonas Aeruginosa InfectionR21AI181780 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Sebastian Alejandro Riquelme Colet · 2025 to 2026
$445k
Columbia University GT007268Cystic Fibrosis Foundation (CF Foundation) RIQUEL21I0NIAID NIH HHS R21 AI181780NIGMS NIH HHS R35 GM146776U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1R21AI181780U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM146776
6 · The paper itself

Abstract

Cystic fibrosis (CF), caused by CFTR mutations, is characterized by progressive pulmonary remodeling, particularly during bacterial infection. This pathological environment, exacerbated by altered epithelial growth, leads to thickened airway walls, inducing permanent narrowing and long-term breathing difficulties. However, what drives this adverse milieu remains unclear. Here, we identify activation of the de novo pathway of pyrimidine synthesis (DNPPS) as a central contributor of CF lung remodeling. In response to impaired mitochondrial bioenergetics, CFTR-mutant epithelial cells engage compensatory DNPPS activity, functionally coupling mitochondrial oxidative metabolism to pyrimidine production and, inadvertently, promoting proliferation. This phenotype is reversible with CFTR modulators and pharmacologic DNPPS inhibitors using clinically established agents. Strikingly, Pseudomonas aeruginosa, the predominant CF pathogen, undergoes convergent pyrimidine adaptation, activating its own DNPPS machinery to amplify biomass and sustain a remodeled niche. Together, these findings define pyrimidine metabolism as a shared host-pathogen axis driving epithelial restructuring and bacterial persistence in the CF lung.

Indexed as

Cystic FibrosisHost-Pathogen InteractionsPyrimidinesAnimalsCystic Fibrosis Transmembrane Conductance RegulatorEpithelial CellsHumansLungMitochondriaMutationPseudomonas aeruginosaPseudomonas InfectionsCFTR protein, humanCystic Fibrosis Transmembrane Conductance RegulatorpyrimidinePyrimidines

Identifiers

PMID42907429
PMCPMC13687554

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.