Evidence map›Paper›PMID 42903554›Full record

ArticlehLife2024

HiTIP-seq profiles epigenomic reprogramming of patient-derived diffuse midline glioma stem cells to epigenetic therapy.

Zhongyao Chen, Qiang Gao, Yukui Shang, Behzad Nasiri Ahmadabadi, Yawei Hu, Wei Zhang, Peng Liu

Abstract read
In one paragraph

Article in hLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhongyao ChenDepartment of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China.
Qiang GaoSchool of Clinical Medicine, Tsinghua University, Beijing, China.
Yukui ShangDepartment of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing, China.
Behzad Nasiri AhmadabadiDepartment of Paediatrics, Faculty of Medicine, CUHK - Hub of Paediatric Excellence, The Chinese University of Hong Kong, Hong Kong, China.
Yawei HuChangping National Laboratory, Beijing, China.
Wei ZhangSchool of Clinical Medicine, Tsinghua University, Beijing, China.
Peng LiuDepartment of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diffuse midline glioma (DMG), H3K27-altered, is lethal pediatric-type, high-grade, localized to the midline region of the central nervous system. Effective treatment guidelines are absent, and clinical trials are preferred for primary or recurrent DMG patients. Recently, epigenetic agent-based immunotherapy has exhibited promising therapeutic effects in the clinical setting. However, the underlying mechanisms remain a mystery. The rare DMG tumor samples from biopsy or resection largely impede basic research, by using patient-derived tumor cells which better recapitulate the parental tumor's heterogeneity compared to established cell lines. As an epigenetic reprogramming disease, DMG exhibits a global loss of H3K27 trimethylation (H3K27me3) and a gain of H3K27 acetylation (H3K27ac). Analysis of multiple epigenetic marks is fundamentally necessary. However, traditional techniques cannot allow ultra-low input and high-throughput. Herein we have developed a new method called high-throughput

Indexed as

chromatin immunoprecipitation sequencing (ChIP-seq)diffuse midline gliomaepigenetic therapyhigh-throughputhistone modification

Identifiers

PMID42903554
PMCPMC13681631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.