Evidence map›Paper›PMID 42901886›Full record

ArticleNature communications2026

Characterization of recombinase-based genetic parts and circuits using nanopore sequencing.

F Veronica Greco, Sarah K Cameron, Shivang Hina-Nilesh Joshi, Sarah Guiziou, Jennifer A N Brophy, Claire S Grierson, Thomas E Gorochowski

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

F Veronica GrecoSchool of Biological Sciences, University of Bristol, Bristol, UK.
Sarah K CameronSchool of Biological Sciences, University of Bristol, Bristol, UK.ORCID 0009-0005-3250-606X
Shivang Hina-Nilesh JoshiSchool of Biological Sciences, University of Bristol, Bristol, UK.ORCID 0000-0002-1294-9550
Sarah GuiziouEarlham Institute, Norwich Research Park, Norwich, UK.ORCID 0000-0002-1185-5421
Jennifer A N BrophyDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID 0000-0001-7808-4281
Claire S GriersonSchool of Biological Sciences, University of Bristol, Bristol, UK.ORCID 0000-0002-4000-0975
Thomas E GorochowskiSchool of Biological Sciences, University of Bristol, Bristol, UK. thomas.gorochowski@bristol.ac.uk.ORCID 0000-0003-1702-786X

Funding

National Science Foundation (NSF) 2340175RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/CCG2220/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/W013959/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/Y007638/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/N510129/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/Y014073/1Research Councils UK (RCUK) MR/Y019008/1Royal Society URF\R\221008
6 · The paper itself

Abstract

Recombinases are versatile enzymes able to perform the precise insertion, deletion, and rearrangement of DNA and can act as a foundation for programmable genetic logic and memory. Crucial for their use are accurate measurements of function. However, these are often laborious, time-consuming, and costly to collect. To address this, we develop a semi-automated workflow that combines low-cost liquid handling robotics, multiplexed long-read nanopore sequencing, and a supporting computational analysis tool to enable the high-throughput and detailed characterization of recombinase parts and circuits when used in a variety of contexts and organisms. Our approach overcomes the limitations of typically used fluorescence-based assays and is able to monitor temporal dynamics, observe structural changes at nucleotide resolution, and unravel the internal workings of complex multi-state circuits. The ability to scale up and automate genetic circuit characterization is an essential step towards more rigorous biological metrology that can support the construction of predictive models for efficiently engineering biology.

Indexed as

Gene Regulatory NetworksNanopore SequencingRecombinasesRecombinases

Identifiers

PMID42901886
PMCPMC13683369

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.