ArticleJournal of molecular modeling2026
Vibrational dynamics of TODD-graphene nanosheets via molecular dynamics simulations and machine-learning surrogate models: implications for adaptive nanomechanical devices.
Article in Journal of molecular modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
contextTODD-Graphene (TODD-G), a porous two-dimensional carbon allotrope composed of interconnected 3-8-10-12 carbon rings, has recently emerged as a promising candidate for nanoelectromechanical and adaptive nanodevice applications due to its metallic conductivity, mechanical compliance, and topologically engineered phonon structure. In this work, the vibrational dynamics of TODD-G nanosheets were systematically investigated to establish structure-property relationships governing resonant behavior under varying geometric, thermal, mechanical, and defect conditions. Fundamental frequencies were found to span 2.93-13.28 THz and follow the classical
methodsAtomic-scale simulations were performed using classical molecular dynamics within the large-scale atomic/molecular massively parallel simulator (LAMMPS) package. Interatomic interactions were described using the adaptive intermolecular reactive empirical bond order (AIREBO) potential with activated Lennard-Jones and torsional terms, while multilayer van der Waals interactions employed a 12-6 Lennard-Jones potential. Structural relaxation was conducted using conjugate-gradient energy minimization. Thermal equilibration employed the Nosé-Hoover thermostat within the canonical (NVT) ensemble, followed by microcanonical (NVE) simulations for vibrational analysis using a timestep of 0.5 fs. Vibrational properties were extracted using impulse-response analysis, velocity autocorrelation functions, harmonic forcing, fast Fourier transform (FFT) spectral analysis, and phonon density-of-states calculations. Simulations systematically examined the effects of nanosheet size, temperature (1-1000 K), tensile strain (0-10%), vacancy-defect concentration (0.5-5%), multilayer stacking (1-5 layers), and boundary conditions (free-free, clamped-free, simply supported, and clamped-clamped). Machine-learning surrogate models including linear regression, support-vector regression with radial-basis-function kernels, random forest regression, and gradient-boosting regression were trained using an 80/20 train-test split and five-fold cross-validation to predict resonance frequency and quality factor across the multidimensional parameter space.
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