Evidence map›Paper›PMID 42895458›Full record

ArticleCurrent protocols2026

Protocol for the Preparation of Polyacrylamide Hydrogels with Tunable Stiffness and Their Application in Cell Culture, Live-Cell Imaging, and Fixed-Cell Immunofluorescence.

Shatruhan Singh Rajput, Osian W Jones, Laura M Machesky

Abstract read
In one paragraph

Article in Current protocols, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shatruhan Singh RajputDepartment of Biochemistry, Sanger Building, 80 Tennis Court Road, University of Cambridge, Cambridge, UK.
Osian W JonesDepartment of Biochemistry, Sanger Building, 80 Tennis Court Road, University of Cambridge, Cambridge, UK.
Laura M MacheskyDepartment of Biochemistry, Sanger Building, 80 Tennis Court Road, University of Cambridge, Cambridge, UK.

Funding

Cancer Research UK Programme DRCRPG-Nov22/100017Human Frontiers Programme RGP00/28/2022
6 · The paper itself

Abstract

Tissue stiffness changes markedly in many pathological conditions, such as cancer and fibrosis, influencing cellular behavior and function. To investigate these effects in vitro, it is necessary to culture cells on substrates whose mechanical properties can be tuned to mimic both normal and diseased tissue environments. This protocol provides a detailed, reproducible procedure for preparing polyacrylamide (PAA) hydrogels with defined stiffness values that are functionalized with extracellular matrix (ECM) proteins and suitable for cell culture and imaging studies. It outlines the steps for cleaning and functionalizing glass coverslips, preparing acrylamide and bis-acrylamide mixtures of desired concentrations, initiating polymerization, and conjugating ECM proteins to support cell adhesion. The protocol further describes the process of seeding cells onto the hydrogels, followed by live-cell imaging, chemical fixation, and staining for visualization of cellular structures and protein localization. Practical notes and troubleshooting tips are also included for maintenance of hydrogel integrity and optimization of experimental reproducibility. The workflow enables systematic investigation of how substrate stiffness regulates cell morphology, migration, cytoskeletal organization, and other mechanosensitive responses. Overall, this protocol provides a reliable framework for preparing and using tunable PAA-based hydrogels in studies of cell-matrix interactions, mechanotransduction, and disease-related changes in tissue mechanics. It is adaptable to a wide range of cell types and compatible with various imaging modalities, offering a versatile platform for mechanobiology research. © 2026 The Author(s). Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: Preparation of polyacrylamide-based hydrogels of tunable rigidities and functionalization for cell culture Support Protocol 1: Preparation of reagents for hydrogel preparation Basic Protocol 2: Staining for live-cell imaging and visualization of cellular structures and protein localization Basic Protocol 3: Chemical fixation and immunofluorescence staining for visualization of cellular structures and protein localization Support Protocol 2: Preparation of reagents and materials for cell fixation and immunostaining.

Indexed as

Acrylic ResinsCell Culture TechniquesFluorescent Antibody TechniqueHydrogelsAnimalsExtracellular Matrix ProteinsHumansPolyacrylamidesAcrylic ResinsExtracellular Matrix ProteinsHydrogelsPolyacrylamidescell fixationconfocal imagingmechanosensingpolyacrylamide hydrogelsubstrate stiffness

Identifiers

PMID42895458
PMCPMC13679459

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.