Evidence map›Paper›PMID 42886515›Full record

ReviewThe Plant cell2026

A cellular view of seed development and germination.

Cunman He, Lucas Auroux, Mathew Lewsey, James Whelan

Abstract readReview
In one paragraph

Review in The Plant cell, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Cunman HeState Key Laboratory of Plant Environmental Resilience, College of Life Science, Zhejiang University, Hangzhou, Zhejiang 310058, P.R. China.ORCID 0000-0002-6331-6059
Lucas AurouxLa Trobe Institute for Sustainable Agriculture and Food, AgriBio, La Trobe University, Melbourne, VIC 3083, Australia.ORCID 0000-0001-7285-5591
Mathew LewseyLa Trobe Institute for Sustainable Agriculture and Food, AgriBio, La Trobe University, Melbourne, VIC 3083, Australia.ORCID 0000-0002-2631-4337
James WhelanState Key Laboratory of Plant Environmental Resilience, College of Life Science, Zhejiang University, Hangzhou, Zhejiang 310058, P.R. China.ORCID 0000-0001-5754-025X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Seeds are fundamental to global food security, yet their encapsulated structure, dense storage compounds, and spatial heterogeneity have created a "hidden box" problem, often restricting research to bulk and tissue approaches that mask cell type-specific regulatory programs. Advances in single-cell and spatial transcriptomics now enable systematic dissection of seed biology at cellular resolution. This review provides a cellular view spanning the developmental continuum from fertilization to seedling establishment by synthesizing single-cell and spatial transcriptomic studies in Arabidopsis thaliana and major crops (Oryza sativa-rice, Zea mays-maize, Hordeum vulgare-barley, Glycine max-soybean, Triticum aestivum-wheat). These technologies reveal previously undetected cellular complexity and heterogeneity: distinct transcriptional subpopulations within morphologically uniform tissues, specialized endosperm microdomains mediating nutrient transfer and metabolic polarity, cell type-specific genomic imprinting patterns, and spatially segregated hormone signaling hubs controlling dormancy and germination. Integration of transcriptional profiling with chromatin accessibility and transcription factor binding data has enabled construction of cell type-specific gene regulatory networks for seeds, advancing from correlation to causal inference and identifying master regulators of developmental transitions. These approaches illuminate how early embryonic patterning establishes transcriptional identities, how metabolic zonation coordinates storage compound accumulation and mobilization, how chromatin states maintain dormancy and license germination competence, and how spatiotemporal coordination integrates hormone signaling with energy metabolism across tissues. Single-cell and spatial approaches are establishing seeds not as opaque structures but as assemblies of coordinated cellular programs amenable to systematic analysis and targeted manipulation for crop improvement.

Indexed as

GerminationSeedsArabidopsisGene Expression Regulation, Plant

Identifiers

PMID42886515
PMCPMC13673986

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.