Evidence map›Paper›PMID 42883953›Full record

ArticleInternational journal of molecular sciences2026

Integrative Transcriptomics and Machine Learning Nominate

Yihan Guo, Dongdong Shi, Lanying Liu, Zhen Wang

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yihan GuoSchool of Integrative Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.
Dongdong ShiSchool of Integrative Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.
Lanying LiuSchool of Integrative Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.
Zhen WangSchool of Integrative Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.ORCID 0000-0003-4319-5314

Funding

National Clinical Collaborative Program of Integrated Traditional Chinese and Western Medicine for Major Difficult Diseases (Depression) (National Administration of Traditional Chinese Medicine Medical Document, Guozhongyi Zongjiehe 2024 No. 3National Natural Science Foundation of China 82230045,32271066, 82471532Shanghai Key Discipline of Traditional Chinese Medicine (Clinical Category) shzyyzdxk-2024107Shanghai Science and Technology Committee 25Y22800100, 23QA1408300Special Fund for Medical Research of Shenzhen C2501006
6 · The paper itself

Abstract

Post-traumatic stress disorder (PTSD) is associated with immune and autonomic disturbances, but molecular programs linking PTSD-related blood transcriptional signals with autonomic-cardiac biology remain incompletely characterized. The public Gene Expression Omnibus (GEO) cohorts analyzed here did not directly measure palpitations or autonomic dysfunction. Peripheral-blood transcriptomes from GSE81761 and GSE63878 were integrated with a prespecified pathway-derived autonomic-cardiac gene set constructed from Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Genes overlapping the curated pathway set were assessed using functional enrichment and protein-protein interaction (PPI) analyses. Multi-algorithm comparison and a separate random-forest/SHapley Additive exPlanations (SHAP) analysis were performed for internal model assessment and biological prioritization. GSE64813 and GSE97356 were analyzed using targeted single-gene analyses and cohort-specific multivariable logistic models. Model performance was examined using repeated nested cross-validation, a fully nested sensitivity analysis, and locked-transfer testing to GSE64813 and GSE97356.

Indexed as

Machine LearningProtein Phosphatase 2Stress Disorders, Post-TraumaticTranscriptomeGene Expression ProfilingGene Regulatory NetworksHumansProtein Interaction MapsProtein Phosphatase 2autonomic dysregulationIL15machine learningpost-traumatic stress disorderPPP2R1Asingle-nucleus RNA sequencingtranscriptomics

Identifiers

PMID42883953
PMCPMC13665173

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.