Evidence map›Paper›PMID 42880220›Full record

ReviewMolecular cell2026

Programming biological behavior with AI-guided de novo protein design.

Philipp Huettemann, Tanja Kortemme

Abstract readReview
In one paragraph

Review in Molecular cell, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Philipp HuettemannDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94143, USA; Tetrad Graduate Program, University of California, San Francisco, San Francisco, CA 94143, USA. Electronic address: philipphuttemann@gmail.com.
Tanja KortemmeDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94143, USA; Tetrad Graduate Program, University of California, San Francisco, San Francisco, CA 94143, USA; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94143, USA. Electronic address: tanjakortemme@gmail.com.

Funding

De novo design and engineering of biological error correctionDP1EB038939 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Tanja Kortemme · 2025 to 2026
$2.3M
NIBIB NIH HHS DP1 EB038939
6 · The paper itself

Abstract

Driven by advances in artificial intelligence, de novo protein design can now generate diverse molecular functions from the ground up, achieving remarkable success in engineering binders against many macromolecular targets. Here, we provide a perspective on how de novo design can progress beyond bimolecular interactions toward the bottom-up construction of protein reaction networks. We highlight how programmable, modular, and controllable de novo components can drive complex, emergent biological behaviors. Overcoming current challenges-including designable protein dynamics, multi-step functionalities, and non-equilibrium systems-is essential for this transition. With continued foundational method improvements, the field is poised to pioneer precise protein perturbations for systems-level insight and to engineer emergent cellular behaviors like signal amplification, decision-making, and error correction de novo to fundamentally advance synthetic biology, biotechnology, and medicine.

Indexed as

Artificial IntelligenceProtein EngineeringProteinsHumansProtein ConformationSynthetic BiologyProteinsconformational landscapesde novo protein designdesign of interaction networksemergent behaviors

Identifiers

PMID42880220
PMCPMC13679063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.