Evidence map›Paper›PMID 42876361›Full record

ReviewGut microbes2026

Functionally declining microbiota in chronic disease: beyond taxonomic loss.

Heenam Stanley Kim

Abstract readReview
In one paragraph

Review in Gut microbes, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Heenam Stanley KimDivision of Biosystems & Biomedical Sciences, College of Health Sciences, Korea University, Seoul, Korea.ORCID 0000-0003-4856-3518

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbiota deterioration in modern human populations has been linked to chronic disease, and taxonomic profiling is increasingly used to understand, diagnose, and guide treatment. Yet such profiles do not fully capture disease-relevant microbiota states. I propose functional decline within retained taxa as a distinct axis of microbiota deterioration, complementary to taxonomic loss. Modern environmental pressures can drive not only taxonomic loss but also directional selection toward variants or lineages with reduced host-beneficial function or increased harmful activity. Two mechanistically characterized systems from studies by my group illustrate this process: antibiotic-selected

Indexed as

BacteriaDermatitis, AtopicGastrointestinal MicrobiomeInflammatory Bowel DiseasesAnimalsAnti-Bacterial AgentsChronic DiseaseHumansAnti-Bacterial Agentsdisappearing microbiotafunctional declinefunctionally declining microbiotaGut microbiotataxonomic loss

Identifiers

PMID42876361
PMCPMC13679332

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.