Evidence map›Paper›PMID 42875897›Full record

ArticleAnimal genetics2026

Genome-Wide Characterization of Heterozygosity-Rich Regions in Kazakh Native Sheep Breeds.

Sholpan Bakhtybekkyzy, Zarina Orazymbetova, Aizhan Mussayeva, Aidana Bekitayeva, Ajoy Mandal, Hasan Baneh

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Article in Animal genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

6 authors.

Sholpan BakhtybekkyzyLaboratory of Animal Genetics and Cytogenetics, RSE Institute of Genetics and Physiology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty, Kazakhstan.ORCID https://orcid.org/0000-0002-0615-7880
Zarina OrazymbetovaLaboratory of Animal Genetics and Cytogenetics, RSE Institute of Genetics and Physiology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty, Kazakhstan.ORCID https://orcid.org/0000-0002-5085-8561
Aizhan MussayevaLaboratory of Animal Genetics and Cytogenetics, RSE Institute of Genetics and Physiology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty, Kazakhstan.ORCID https://orcid.org/0000-0003-2871-1552
Aidana BekitayevaLaboratory of Animal Genetics and Cytogenetics, RSE Institute of Genetics and Physiology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty, Kazakhstan.ORCID https://orcid.org/0000-0001-7301-6626
Ajoy MandalAnimal Breeding Section, ICAR-National Dairy Research Institute, Eastern Regional Station, Kalyani, India.ORCID https://orcid.org/0000-0002-6455-4526
Hasan BanehCenter for Bio- and Medical Technologies, Skolkovo Institute of Science and Technology (Skoltech), Moscow, Russia.ORCID https://orcid.org/0000-0003-2437-6005

Funding

Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan BR24993004
6 · The paper itself

Abstract

Heterozygosity-rich regions (HRR) are genomic segments characterized by high heterozygosity that may arise from admixture, introgression, or balancing selection and may harbor loci associated with adaptation and fitness-related traits. This study aimed to characterize HRR patterns in five Kazakh sheep breeds using a publicly available OvineSNP50 genotyping dataset. After quality control, ~25 000 SNPs were retained for 1634 Akzhaiyk, 1089 Edilbay, 532 Kazakh Fine-Wool, 932 Kazakh Semi-Coarse, and 282 Saryarka sheep. HRR were detected separately in each breed using the sliding-window approach in detectRUNS R package, with a minimum segment length of 250 kb, at least 10 SNPs per window and segment, and a maximum of two opposing homozygous and one missing SNP per window. The average number of HRR per individual ranged from 40.75 ± 6.38 in Saryarka to 54.75 ± 7.34 in Kazakh Fine-Wool sheep. HRR lengths ranged from 259.07 kb to 3.26 Mb, with an average of 0.7 Mb across breeds. Seventeen HRR islands, defined as regions shared by HRR in at least 25% of individuals within a breed, were identified, including regions on chromosomes 8 and 17 shared across all breeds. Genes overlapping these islands were associated with cellular homeostasis, immunity, metabolism, growth, and stress response, while the HRR islands overlapped with QTL associated with health, wool characteristics, and reproduction. These findings highlight the potential of HRR analysis to identify candidate genomic regions relevant to adaptation and economically important traits, providing insights for the conservation and genetic improvement of Kazakh sheep populations.

Indexed as

GenomeHeterozygoteSheep, DomesticAnimalsBreedingGenotypeKazakhstanPolymorphism, Single Nucleotideadaptationgenetic diversityheterozygosity‐rich regionsKazakh sheep breedssheepSNP genotyping

Identifiers

PMID42875897
PMCPMC13669415

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