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ArticlePediatric research2026

Sibling factors associated with gut microbiota and fecal short-chain fatty acids in preschoolers.

Yuichiro Tanaka, Ryohei Shibata, Yumiko Nakanishi, Tamotsu Kato, Bahrul Fikri, Tomoko Takahashi, Kenichi Sakurai, Midori Yamamoto, Masayuki Shima, Yasuhiro Takeshima and 13 more

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Article in Pediatric research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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4 · The record

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5 · Who and what money

Authors and funding

23 authors.

Yuichiro Tanaka *Laboratory for Immune Regulation, Graduate School of Medical Pharmaceutical Science, Chiba University, Chiba, Japan.
Ryohei Shibata *Laboratory for Intestinal Ecosystem, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan. ryohei.shibata@a.riken.jp.ORCID http://orcid.org/0000-0002-6195-441X
Yumiko NakanishiLaboratory for Intestinal Ecosystem, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Tamotsu KatoLaboratory for Intestinal Ecosystem, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Bahrul FikriDepartment of Pediatrics, Faculty of Medicine, Hasanuddin University, Makassar, Indonesia.
Tomoko TakahashiCenter for Preventive Medical Sciences, Chiba University, Chiba, Japan.
Kenichi SakuraiCenter for Preventive Medical Sciences, Chiba University, Chiba, Japan.
Midori YamamotoCenter for Preventive Medical Sciences, Chiba University, Chiba, Japan.
Masayuki ShimaSchool of Nursing, Hyogo Medical University, Kobe, Japan.
Yasuhiro TakeshimaHyogo Regional Center for the Japan Environment and Children's study, Hyogo Medical University, Nishinomiya, Japan.
Narumi TokudaHyogo Regional Center for the Japan Environment and Children's study, Hyogo Medical University, Nishinomiya, Japan.
Taku OishiDepartment of Pediatrics, Kochi Medical School, Kochi University, Nankoku, Japan.
Narufumi SuganumaCenter for Child Health and Environmental Medicine, Kochi University, Kochi, Japan.
Kahoko Yasumitsu-LovellCenter for Child Health and Environmental Medicine, Kochi University, Kochi, Japan.
Takahiro ArimaDepartment of Informative Genetics, Environment and Genome Research Center, Tohoku University Graduate School of Medicine, Sendai, Japan.
Hiroshi KitazawaDivision of Pediatrics, Faculty of Medicine, Tohoku Medical and Pharmaceutical University, Sendai, Japan.
Nobuo YaegashiEnvironment and Genome Research Center, Tohoku University Graduate School of Medicine, Sendai, Japan.
Yuichi AdachiDepartment of Pediatrics, Faculty of Medicine, Toyama University, Toyama, Japan.
Hidekuni InaderaDepartment of Public Health, Faculty of Medicine, Toyama University, Toyama, Japan.
Shokei MurakamiDepartment of Pediatrics, Faculty of Medicine, Toyama University, Toyama, Japan.
Chisato MoriCenter for Preventive Medical Sciences, Chiba University, Chiba, Japan.
Naoki ShimojoCenter for Preventive Medical Sciences, Chiba University, Chiba, Japan.
Hiroshi OhnoLaboratory for Immune Regulation, Graduate School of Medical Pharmaceutical Science, Chiba University, Chiba, Japan. hiroshi.ohno@riken.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSibling factors are linked not only to disease development but also to gut environmental factors (e.g., microbiota, short-chain fatty acids [SCFA]). However, these associations among preschoolers and their underlying mechanisms remain unclear.

methodsIn a sub-cohort study of a nationwide birth-cohort study, using fecal microbiome and SCFA data from 903 children at age 2 or 4 years, we examined associations of sibling factors with gut environmental factors. We also determined enterotypes by clustering and sibling-enterotype associations with potential mediation pathways.

resultsAmong sibling factors, the number of older siblings showed the strongest associations with gut environmental factors. We identified 3 enterotypes: 1) Mediterraneibacter gnavus group, 2) Faecalibacterium, and 3) Ruminococcus. Compared to enterotype 2, having older siblings was associated with lower odds of enterotype 1, with the lowest Shannon index and propionate level, at age 2 (1 sibling: adjOR 0.49, 95%CI 0.34-0.69; ≥2: adjOR 0.32, 95%CI, 0.19-0.54) and 4 (1 sibling: adjOR 0.45, 95%CI 0.26-0.77; ≥2: adjOR 0.22, 95%CI 0.08-0.53) years. These associations were largely direct, with modest mediation by antibiotic use at age 4 years (1 sibling, adjOR 0.89; 95%CI, 0.79-1.00).

conclusionOur data identified distinct enterotypes of preschoolers and sibling-enterotype association pathways. IMPACT: In this nationwide multicenter birth-cohort sub-cohort, older siblings were strongly associated with gut microbial composition in preschoolers. Having older siblings was associated with lower odds of a potentially less mature enterotype characterized by the lowest Shannon index and propionate level. The sibling-enterotype association was mainly direct, with modest mediation by recent antibiotic use. This study extends sibling-microbiota evidence beyond infancy/toddlerhood by identifying three enterotypes with distinct microbial and short-chain fatty acid profiles. These findings clarify pathways linking family structure to gut environmental development and may inform microbiota-targeted disease prevention strategies.

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.