Evidence map›Paper›PMID 42873192›Full record

ArticleMolecular informatics2026

Identification of YES1 Inhibitors From Approved Drugs Using a Multimodal Deep Learning Framework.

Takayoshi Kawabata, Tatsuaki Takeda, Yuta Tanaka, Soichiro Ushio, Akira Miyamoto, Koki Nakagomi, Tomonori Sakai, Risa Maruyama, Takashi Makita, Hirofumi Hamano and 2 more

Abstract read
In one paragraph

Article in Molecular informatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Takayoshi KawabataDepartment of Clinical Pharmacy, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.
Tatsuaki TakedaCenter for Education in Medicine and Health Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.ORCID https://orcid.org/0000-0002-9872-2559
Yuta TanakaDepartment of Pharmacy, Okayama University Hospital, Okayama, Japan.ORCID https://orcid.org/0009-0004-7291-8854
Soichiro UshioDepartment of Pharmaceutical Sciences for Health Crisis Management, Faculty of Pharmaceutical Sciences, Fukuoka University, Fukuoka, Japan.ORCID https://orcid.org/0000-0003-4365-7857
Akira MiyamotoDepartment of Pharmacy, Yokohama Municipal Citizen's Hospital, Yokohama, Japan.
Koki NakagomiDigital Innovation Section, Digital Transformation Promotion Department, Nippon Shinyaku co., Ltd., Kyoto, Japan.
Tomonori SakaiDepartment of Clinical Pharmacy, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.ORCID https://orcid.org/0009-0008-1018-1307
Risa MaruyamaDepartment of Clinical Pharmacy, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.
Takashi MakitaDepartment of Pharmacy, Okayama University Hospital, Okayama, Japan.ORCID https://orcid.org/0009-0008-2276-7217
Hirofumi HamanoDepartment of Pharmacy, Medical Development Field, Okayama University, Okayama, Japan.
Shinichi ToyookaDepartment of General Thoracic Surgery and Breast and Endocrinological Surgery, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.ORCID https://orcid.org/0000-0002-7588-6745
Yoshito ZamamiDepartment of Clinical Pharmacy, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.ORCID https://orcid.org/0000-0002-7879-423X

Funding

Japan Society for the Promotion of Science 23K14412Japan Society for the Promotion of Science 25K02867Japan Society for the Promotion of Science 25K22708
6 · The paper itself

Abstract

While anti-human epidermal growth factor receptor 2 (HER2) drugs, including trastuzumab improve the prognosis of patients with HER2-positive cancers, acquired resistance by cancer cells remains a significant clinical challenge. We had previously reported that YES1 is overexpressed in trastuzumab-resistant breast and lung cancer cells, and that its inhibition restores trastuzumab sensitivity. However, no approved drug specifically targets YES1. In this study, as a drug repositioning approach aimed at rapid clinical application, we constructed a machine learning model capable of learning the interactions between compounds and target proteins and conducted a screening of approved drugs. The strategy identified chlorpromazine and raloxifene as hit compounds. In vitro validation demonstrated that they effectively inhibited YES1 activation at 15 μM after 48 h. The findings suggested that the identified approved drugs might represent promising therapeutic options for overcoming anti-HER2 drug resistance.

Indexed as

Antineoplastic AgentsDeep LearningDrug RepositioningProtein Kinase InhibitorsProto-Oncogene Proteins c-yesCell Line, TumorDrug Resistance, NeoplasmErb-b2 Receptor Tyrosine KinasesHumansRaloxifene HydrochlorideAntineoplastic AgentsErb-b2 Receptor Tyrosine KinasesProtein Kinase InhibitorsProto-Oncogene Proteins c-yesRaloxifene HydrochlorideYES1 protein, humanantitumor agentsdrug repositioningdrug resistanceHER2 resistancevirtual screening

Identifiers

PMID42873192
PMCPMC13665583

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.