Evidence map›Paper›PMID 42870193›Full record

ArticleMagma (New York, N.Y.)2026

Impact of different pre-processing methods combined with combat harmonization on the reproducibility of radiomics features in healthy human brain MRI.

Lihua Chen, Bowen Zheng, Weixiong Zeng, Yijun Lv, Haijian Zhong, Genggeng Qin

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Article in Magma (New York, N.Y.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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6 authors.

Lihua ChenSchool of Medical and Information Engineering, Gannan Medical University, Ganzhou, 341000, Jiangxi, China.
Bowen ZhengDepartment of Diagnostic Imaging , Nanfang Hospital, Southern Medical University, Guangzhou, 510000, Guangdong, China.
Weixiong ZengDepartment of Diagnostic Imaging , Nanfang Hospital, Southern Medical University, Guangzhou, 510000, Guangdong, China.
Yijun LvDepartment of Diagnostic Imaging , Nanfang Hospital, Southern Medical University, Guangzhou, 510000, Guangdong, China.
Haijian ZhongSchool of Medical and Information Engineering, Gannan Medical University, Ganzhou, 341000, Jiangxi, China. hjzhong2007@gmu.edu.cn.
Genggeng QinDepartment of Diagnostic Imaging , Nanfang Hospital, Southern Medical University, Guangzhou, 510000, Guangdong, China. zealotq@smu.edu.cn.

Funding

Ganzhou City Science and Technology Program Projects 2022-RC1349Guangdong Provincial Applied Science and Technology Research and Development Program 2024A1111120015National Natural Science Foundation of China 32571282National Natural Science Foundation of China 62571141Natural Science Foundation of Guangdong Province 2024A1515011520
6 · The paper itself

Abstract

objectiveTo explore the effect of different pre-processing methods combined with ComBat harmonization on improving the stability of MRI radiomic features in healthy human brains.

methodsT1FLAIR and T2W scans from 416 healthy subjects across four MRI systems underwent seven pipelines (Original, N4, Z-Score, DTN, Nyul, WhiteStripe, RAVEL). SynthSeg segmented white/gray matter for 93 IBSI radiomic features. Stability was quantified via covariate-adjusted standardized scanner effect (d = β_scanner/σ_res, |d|< 0.2) with 95% bootstrap CIs, supplemented by PCA and LOOCV AUC. Friedman and post-hoc McNemar tests with Bonferroni correction compared pipelines. FDR-corrected partial correlations assessed retention of significant age and sex associations after ComBat.

resultsRaw data exhibited extremely low stability with substantial scanner-induced effects, while scanner classification AUC was close to 1.0. ComBat harmonization significantly improved stability across all pipelines and reduced AUC to near 0.5. Within this dataset, DTN_ComBat demonstrated consistently high stability; pairwise statistical comparisons indicated it showed more favourable stability performance relative to most other pipelines for the majority of tested contrasts, with stable proportions exceeding 90% across all sequences and tissues, and retained 75.0-100.0% of statistically significant age and sex-related associations.

conclusionUnprocessed brain MRI radiomic features exhibit poor cross‑scanner stability. Within this dataset, ComBat effectively reduces scanner‑related feature‑distribution differences, while preserving most statistically‑significant age and sex‑related associations. Among tested pre-processing pipelines, DTN_ComBat showed comparatively favourable performance under the present healthy‑brain MRI scanner‑protocol configurations.

Indexed as

Brain MRI radiomicsComBat harmonizationPre-processingReproducibilityScanner effect

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.