Evidence map›Paper›PMID 42861837›Full record

ArticleProtein science : a publication of the Protein Society2026

Sequence-encoded dynamics diversify allostery within a conserved protein scaffold.

Sanuja Mohanaraj, Miray Samuel, Eva Siminiceanu, Nazgol Missaghi, Rodrigo A Maillard

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Sequence-encoded dynamics diversify allostery within a conserved protein scaffold.Protein science : a publication of the Protein Society · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sanuja MohanarajDepartment of Chemistry, Georgetown University, Washington, DC, USA.ORCID https://orcid.org/0009-0003-9536-747X
Miray SamuelDepartment of Chemistry, Georgetown University, Washington, DC, USA.ORCID https://orcid.org/0009-0003-7528-5813
Eva SiminiceanuDepartment of Chemistry, Georgetown University, Washington, DC, USA.
Nazgol MissaghiDepartment of Chemistry, Georgetown University, Washington, DC, USA.ORCID https://orcid.org/0009-0001-9377-080X
Rodrigo A MaillardDepartment of Chemistry, Georgetown University, Washington, DC, USA.ORCID https://orcid.org/0000-0001-5078-6775

Funding

United States-Israel Binational Science Foundation 2023105
6 · The paper itself

Abstract

Proteins evolve allosteric mechanisms through sequence variation while preserving a conserved structural fold. How these substitutions reshape the protein's conformational landscape to drive functional diversification remains poorly understood. Members of the cAMP receptor protein family (CRP), a ubiquitous bacterial transcription factor, share a common architecture yet differentially couple cAMP binding to DNA interactions. Here, our results support a model in which allosteric diversification in CRP arises from the tuning of sequence-encoded protein's conformational dynamics. Comparative analysis of sequence conservation and helical propensity across proteobacterial and actinobacterial CRPs reveals lineage-specific distributions of conformational heterogeneity within the dimerization C-helix. These evolutionary patterns map onto the proteobacterial Escherichia coli (E. coli) CRP and the actinobacterial Mycobacterium tuberculosis (MTB) CRP, two protein homologs that respond to cAMP through distinct allosteric mechanisms. Guided by functional and evolutionary differences, we introduced CRP

Indexed as

Bacterial ProteinsCyclic AMP Receptor ProteinEscherichia coliEscherichia coli ProteinsMycobacterium tuberculosisAllosteric RegulationAmino Acid SequenceCyclic AMPEvolution, MolecularModels, MolecularBacterial ProteinsCyclic AMPCyclic AMP Receptor ProteinEscherichia coli ProteinsallosterycAMPcAMP receptor protein (CRP)conformationdynamicsensembleprotein stability

Identifiers

PMID42861837
PMCPMC13656347

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.