Evidence map›Paper›PMID 42844634›Full record

ArticleFungal biology and biotechnology2026

Beyond carbon dioxide: decoupling headspace and buffering reveals a bicarbonate requirement for anaerobic gut fungi growth.

Kevin Edward Schulz, Alisa Pfau, Tuba Tarhan, Charlotte van Almsick, Dominik Scholz, Anto Rafael Sikirić, Anke Neumann, Katrin Ochsenreither

Abstract read
In one paragraph

Article in Fungal biology and biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kevin Edward SchulzKarlsruhe Institute of Technology, Fritz-Haber-Weg 4, 76131, Karlsruhe, Germany. kevin.schulz@kit.edu.ORCID http://orcid.org/0000-0003-3556-6250
Alisa PfauKarlsruhe Institute of Technology, Fritz-Haber-Weg 4, 76131, Karlsruhe, Germany.ORCID http://orcid.org/0009-0008-6885-4674
Tuba TarhanKarlsruhe Institute of Technology, Fritz-Haber-Weg 4, 76131, Karlsruhe, Germany.ORCID http://orcid.org/0009-0003-7876-6460
Charlotte van AlmsickKarlsruhe Institute of Technology, Fritz-Haber-Weg 4, 76131, Karlsruhe, Germany.ORCID http://orcid.org/0009-0001-9567-5048
Dominik ScholzKarlsruhe Institute of Technology, Fritz-Haber-Weg 4, 76131, Karlsruhe, Germany.ORCID http://orcid.org/0009-0000-4212-1706
Anto Rafael SikirićKarlsruhe Institute of Technology, Fritz-Haber-Weg 4, 76131, Karlsruhe, Germany.ORCID http://orcid.org/0009-0009-0793-9161
Anke NeumannKarlsruhe Institute of Technology, Fritz-Haber-Weg 4, 76131, Karlsruhe, Germany. anke.neumann@kit.edu.ORCID http://orcid.org/0000-0002-9969-7586
Katrin OchsenreitherKaiserslautern University of Applied Sciences, Carl-Schurz-Str. 10 - 16, 66953, Pirmasens, Germany.ORCID http://orcid.org/0000-0002-5797-2789

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAnaerobic gut fungi (Neocallimastigomycota) are major lignocellulose degraders in herbivore gastrointestinal tracts, but reproducible axenic cultivation remains difficult because conventional serum-bottle systems intrinsically couple CO

resultsComparison of CO

conclusionsHeadspace composition and inorganic carbon availability are key determinants of anaerobic gut fungal cultivation. The results indicate that bicarbonate supports sustained anaerobic gut fungal activity beyond extracellular pH stabilization and cannot be functionally replaced by the tested organic carboxylates. Decoupling gas phase, buffering chemistry, and pH control provides a more interpretable and reproducible cultivation framework for physiological studies and biotechnological application of anaerobic gut fungi.

Indexed as

Anaplerotic metabolismBicarbonate requirementBiomass quantificationGas-phase effectsHydrogenosomal metabolismInorganic carbon availabilityNeocallimastigomycota

Identifiers

PMID42844634
PMCPMC13644296

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.