Evidence map›Paper›PMID 42844624›Full record

ArticleMicrobiome2026

Novel Antarctic chemolithotroph drives iron biomineralization.

Jaekyung Yoon, Boyoung Lee, Kyu-Cheul Yoo, Min-Jung Kwak, Hae Jung Song, Chung Yeon Hwang, Yusook Chung, Kitae Kim, Soon-Kyeong Kwon, Ju Yeon Song and 2 more

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Article in Microbiome, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

12 authors.

Jaekyung YoonDepartment of Systems Biology, Division of Life Sciences, and Institute for Life Science and Biotechnology, Yonsei University, Seoul, South Korea.
Boyoung Lee *Department of Systems Biology, Division of Life Sciences, and Institute for Life Science and Biotechnology, Yonsei University, Seoul, South Korea.
Kyu-Cheul Yoo *Korea Polar Research Institute (KOPRI), Incheon, South Korea.
Min-Jung Kwak *Department of Systems Biology, Division of Life Sciences, and Institute for Life Science and Biotechnology, Yonsei University, Seoul, South Korea.
Hae Jung SongDepartment of Biological Sciences, Sungkyunkwan University, Suwon, South Korea.
Chung Yeon HwangKorea Polar Research Institute (KOPRI), Incheon, South Korea.
Yusook ChungDepartment of Systems Biology, Division of Life Sciences, and Institute for Life Science and Biotechnology, Yonsei University, Seoul, South Korea.
Kitae KimDepartment of Systems Biology, Division of Life Sciences, and Institute for Life Science and Biotechnology, Yonsei University, Seoul, South Korea.
Soon-Kyeong KwonDivision of Applied Life Science (Brain Korea 21), Gyeongsang National University, Jinju, South Korea.
Ju Yeon SongDepartment of Systems Biology, Division of Life Sciences, and Institute for Life Science and Biotechnology, Yonsei University, Seoul, South Korea.
Hwan Su Yoon *Department of Biological Sciences, Sungkyunkwan University, Suwon, South Korea. hsyoon2011@skku.edu.
Jihyun F Kim *Department of Systems Biology, Division of Life Sciences, and Institute for Life Science and Biotechnology, Yonsei University, Seoul, South Korea. jfk1@yonsei.ac.kr.ORCID https://orcid.org/0000-0001-7715-6992

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIron, the most abundant redox-active metal in the Earth's crust, is coupled to numerous biogeochemical cycles. However, the mechanisms of iron oxidation and the organisms involved remain incompletely understood. Banded iron formations (BIFs) are a major reservoir of iron ore in the Precambrian sedimentary record, yet the biological contribution to their genesis remains a subject of unresolved debate. While large-scale BIF deposition largely ceased after the Proterozoic, microbial activity in modern Holocene sediments under fluctuating redox conditions provides a unique opportunity to examine mechanisms reminiscent of ancient iron cycling. Here, we report the stratigraphic sequence of microbiome profiles recorded in laminated facies with iron-containing crystalline illite in the embayment sediments beneath the Larsen C Ice Shelf (LCIS) in Antarctica during the Holocene.

resultsLCIS sediments record microbial community shifts tightly coupled to environmental changes throughout the Holocene. Metagenomic analyses revealed three dominant microbial phases corresponding to geological facies boundaries. The open marine setting (phase A) showed higher taxonomic richness, whereas the sub-ice shelf sediments (phases B and C) were largely anoxic and characterized by diverse chemolithoautotrophic metabolisms. Keystone taxa including uncultured members of Thermodesulfovibrionia, as well as unique microbial communities and metabolisms, were evident in the aphotic, anoxic seawater; metagenomic analyses further revealed chemolithotrophy. The Thermodesulfovibrionia bacterium, visualized using fluorescence in situ hybridization and designated as "Candidatus Mariimomonas ferrooxydans", formed a novel clade in the phylum Nitrospirota. Metagenome-assembled genome analysis identified a putative outer-membrane Fe(II) oxidase, Cyc2, whose Fe(II)-oxidation activity was experimentally confirmed.

conclusionOur findings document the interaction between microbiome and environment, illustrating how LCIS sediments preserve a dynamic record of microbial community responses to environmental transitions. These results provide critical insights into microbial iron mineralization, echoing the biogeochemistry of the geologic past, particularly synglacial iron formation during the Neoproterozoic Snowball Earth. Video Abstract.

Indexed as

BacteriaBiomineralizationChemoautotrophic GrowthGeologic SedimentsIronMicrobiotaAntarctic RegionsMetagenomicsOxidation-ReductionPhylogenyRNA, Ribosomal, 16SSeawaterIronRNA, Ribosomal, 16SBiomineralizationEnvironmental DNA (eDNA)Iron reductionNitrate-dependent iron-oxidizing (NDFO) bacteriumSedimentary ancient DNA (sedaDNA; aDNA)

Identifiers

PMID42844624
PMCPMC13647500

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.