Evidence map›Paper›PMID 42838959›Full record

ArticleNature communications2026

DNA-PK driven nucleosome unwrapping enables NHEJ in chromatin.

Weifeng Lu, Alex Vogt, Susan P Lees-Miller, Yuan He

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Weifeng LuDepartment of Biophysics, Johns Hopkins University, Baltimore, MD, USA.
Alex VogtDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.
Susan P Lees-MillerDepartment of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada.ORCID 0000-0001-5809-2516
Yuan HeDepartment of Biophysics, Johns Hopkins University, Baltimore, MD, USA. yuanhe@jhu.edu.ORCID 0000-0002-1455-3963

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Structure and Mechanism of Non-Homologous End JoiningR01GM135651 · NIGMS · NORTHWESTERN UNIVERSITY · PI HE, YUAN · 2020 to 2024
$1.8M
Structure and Mechanism of Eukaryotic Transcription RegulationR01GM144559 · NIGMS · NORTHWESTERN UNIVERSITY · PI HE, YUAN · 2022 to 2025
$1.4M
Structure and mechanism of how cells read and repair the genomeR35GM158347 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Yuan He · 2025 to 2026
$1.2M
NCI NIH HHS P01 CA092584NIGMS NIH HHS R01 GM135651NIGMS NIH HHS R01 GM144559NIGMS NIH HHS R35 GM158347U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P01CA092584U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM135651U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM144559U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM158347
6 · The paper itself

Abstract

DNA double-strand breaks, one of the most cytotoxic forms of DNA damage, are primarily repaired by non-homologous end joining (NHEJ) in human cells. NHEJ is initiated by the Ku70/80 heterodimer (Ku) and DNA-dependent protein kinase catalytic subunit (DNA-PKcs), followed by factors that bridge and ligate DNA ends. Ku and DNA-PKcs require ~28 base pairs of free duplex DNA, which is often unavailable in chromatin with nucleosomes acting as barriers. The role of DNA-PKcs remains unclear, as previous in vitro studies mainly used naked DNA. Here, in vitro ligation assays show that DNA-PKcs promotes NHEJ on nucleosomes with limited DNA accessibility. Cryo-EM structures of nucleosome-bound Ku and DNA-PKcs reveal that Ku encounters nucleosomal barriers and overcomes them with DNA-PKcs. Distinct structural states support a stepwise model of DNA-PK progressive translocating along nucleosomal DNA, highlighting DNA-PKcs function in chromatin-associated NHEJ in vivo.

Indexed as

ChromatinDNA-Activated Protein KinaseDNA End-Joining RepairNucleosomesCryoelectron MicroscopyDNADNA Breaks, Double-StrandedHumansKu AutoantigenChromatinDNADNA-Activated Protein KinaseKu AutoantigenNucleosomesXrcc6 protein, human

Identifiers

PMID42838959
PMCPMC13642939

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.