Evidence map›Paper›PMID 42820864›Full record

ArticleJournal of human immunity2026

Management change following NGS diagnosis of inborn errors of immunity: The Australasian experience.

Shruti Swamy, Bella Shadur, Hannah Hu, Kahn Preece, Kuang-Chih Hsiao, Annaliesse Blincoe, Jovanka King, Natasha Moseley, Andrew McLean-Tooke, Anna Sullivan and 27 more

Abstract read
In one paragraph

Article in Journal of human immunity, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Shruti SwamyClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0009-0008-2396-3260
Bella ShadurClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0003-0245-894X
Hannah HuClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-5006-5828
Kahn PreeceClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-7326-6585
Kuang-Chih HsiaoClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0001-7412-9761
Annaliesse BlincoeClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-9916-7980
Jovanka KingClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-6783-4830
Natasha MoseleyClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0003-2867-4800
Andrew McLean-TookeClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0003-4307-0837
Anna SullivanClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0009-0005-0290-9589
Peter McNaughtonClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-4600-8839
Alberto Pinzon-CharryClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0001-8870-6304
Mariana Machado MeloClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0009-0004-5280-469X
Alisa KaneClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-6688-3462
Lucinda J BerglundClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-6595-9947
Dan SuanClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0001-5996-5120
Seth L MastersCentre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research , Clayton, Australia.ORCID 0000-0003-4763-576X
Ilia VoskoboinikKiller Cell Biology Laboratory, Peter MacCallum Cancer Centre, Melbourne, Australia.ORCID 0000-0002-6410-009X
Satoshi OkadaHiroshima University Graduate School of Biomedical and Health Sciences , Hiroshima, Japan.ORCID 0000-0002-4622-5657
Cindy S MaClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0001-5387-8413
Christopher C GoodnowFaculty of Medicine and Health, University of Sydney, Camperdown, Australia.ORCID 0000-0001-5296-6155
Peter HsuClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0003-4620-073X
Isabelle BosiClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0001-9313-6692
Nicolás UrriolaClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-4023-435X
Alex StoyanovClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-8395-4365
Ming-Wei LinClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-5471-7731
Jan SinclairStarship Child Health, Te Toka Tumai , Auckland, New Zealand.ORCID 0000-0002-1188-0096
Shannon BrothersStarship Child Health, Te Toka Tumai , Auckland, New Zealand.ORCID 0000-0002-2306-2840
Theresa ColeClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-8272-4074
Joanne M SmartClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0003-4658-3101
Sam MehrClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0003-2483-917X
Stephanie RichardsClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0009-0004-4360-0548
Mark TarantoThe Royal Children's Hospital , Parkville, Australia.ORCID 0009-0008-2395-9608
Brynn WainsteinClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0001-5704-650X
Katie FrithClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-7258-1348
Paul E GrayClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0003-2057-3968
Stuart G TangyeClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-5360-5180

Funding

CORIO FoundationJeffrey Modell FoundationJohn Brown Cook FoundationMedical Research Future Fund 2025157National Health and Medical Research Council 1176665National Health and Medical Research Council 2017463National Health and Medical Research Council 2034593
6 · The paper itself

Abstract

Inborn errors of immunity (IEIs) are rare monogenic disorders with diverse, often life-limiting manifestations. Next-generation sequencing (NGS) has transformed IEI diagnostics, but data on therapeutic impact remain limited. We conducted a multicenter retrospective study through the Clinical Immunogenomics Research Consortium of Australasia, encompassing 12 hospitals across Australia and New Zealand. Probands with confirmed monogenic IEIs diagnosed by panel, whole-exome, or whole-genome sequencing were included. Among 205 probands with pathogenic variants in 86 genes, NGS findings prompted management changes in 84%: 71.7% major and 12.2% minor. Major changes included recommendation/planning for hematopoietic stem cell transplant (40.8%), initiation of targeted therapies (39.5%), and immunoglobulin replacement or prophylactic antimicrobials (18.4% each). Cascade testing identified 32 affected relatives, including four from probands who themselves did not have a discernible management change, demonstrating the broader impact of molecular diagnosis. Overall, NGS-based diagnosis drove substantial management changes and further defined the Australasian IEI landscape, supporting early genomic testing as a cornerstone of precision care.

Identifiers

PMID42820864
PMCPMC13629484

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.