Evidence map›Paper›PMID 42818164›Full record

ArticlebioRxiv : the preprint server for biology2026

A Computational Model of Oxidative Stress in a Human Ventricular Myocyte.

Hannah M Zukowski, Gonzalo Hernandez Hernandez, Pei Chi Yang, Colleen E Clancy

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hannah M ZukowskiBiomedical Engineering Graduate Group, University of California, Davis, California, USA.ORCID 0009-0008-7625-0942
Gonzalo Hernandez HernandezDepartment of Physiology and Membrane Biology, University of California, Davis, California, USA.ORCID 0000-0001-6940-9005
Pei Chi YangDepartment of Physiology and Membrane Biology, University of California, Davis, California, USA.ORCID 0000-0002-5753-1131
Colleen E ClancyDepartment of Physiology and Membrane Biology, University of California, Davis, California, USA.ORCID 0000-0001-6849-4885

Funding

Development of the Predictive NeuroCardiovascular SimulatorOT2OD026580 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CLANCY, COLLEEN E, GRANDI, ELEONORA · 2018 to 2021
$5.7M
In silico Safety PharmacologyR01HL128537 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CLANCY, COLLEEN E, SANTANA, LUIS F · 2016 to 2024
$5.7M
An Intervention for Promoting Smoke-free Policy in Rural KentuckyR01HL086450 · NHLBI · UNIVERSITY OF KENTUCKY · PI HAHN, ELLEN J · 2007 to 2011
$3.4M
NHLBI NIH HHS R01 HL086450NHLBI NIH HHS R01 HL128537NIH HHS OT2 OD026580
6 · The paper itself

Abstract

Mitochondrial reactive oxygen species (ROS) are implicated in cardiac dysfunction, but complex dynamic interactions between ROS, intracellular calcium, and electrophysiology make it difficult to resolve mechanisms experimentally. We developed the Zukowski excitation-contraction-mitochondrial-ROS (ECM-ROS) model, a computational model that couples human ventricular electrophysiology with mitochondrial calcium handling, energetics, ROS production, and ROS dependent modulation of the ryanodine receptor, SERCA, L-type calcium current, and late sodium current. Model predictions were evaluated against independent experimental measurements of ROS induced changes in action potential duration and intracellular calcium. We then used the model to characterize ROS calcium feedback across physiological pacing rates and applied it to doxorubicin induced oxidative stress. Increasing cytosolic calcium produced nonlinear amplification of mitochondrial activity and cytosolic ROS, with greater amplification at faster pacing rates. Moderate ROS elevation initially enhanced calcium release, whereas greater oxidative stress depleted sarcoplasmic reticulum calcium stores. During simulated doxorubicin exposure, faster pacing lowered the level of oxidative stress required to produce calcium dysregulation and action potential prolongation. Mitochondrial ROS and calcium accumulation preceded detectable electrophysiological remodeling. In populations incorporating variability in ion channel expression, neither doxorubicin induced oxidative stress nor subtle pharmacological I

Indexed as

calcium handlingcardiac electrophysiologycomputational modelingdoxorubicinmitochondrial dysfunctionReactive oxygen speciesrepolarization reserveventricular arrhythmia

Identifiers

PMID42818164
PMCPMC13622087

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.