Evidence map›Paper›PMID 42814349›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2027

Protocols for Root Developmental Studies in White Lupin.

Mélanie Gasser, Laurent Brottier, Laurence Marquès, Benjamin Péret

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Article in Methods in molecular biology (Clifton, N.J.), 2027. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mélanie GasserInstitut des Sciences des Plantes de Montpellier (IPSiM), UMR 5004 CNRS/INRAE/Institut Agro, Université de Montpellier, 2 Place Pierre Viala, Montpellier, Cedex 2, 34060, France.
Laurent BrottierInstitut des Sciences des Plantes de Montpellier (IPSiM), UMR 5004 CNRS/INRAE/Institut Agro, Université de Montpellier, 2 Place Pierre Viala, Montpellier, Cedex 2, 34060, France.
Laurence MarquèsInstitut des Sciences des Plantes de Montpellier (IPSiM), UMR 5004 CNRS/INRAE/Institut Agro, Université de Montpellier, 2 Place Pierre Viala, Montpellier, Cedex 2, 34060, France.
Benjamin PéretInstitut des Sciences des Plantes de Montpellier (IPSiM), UMR 5004 CNRS/INRAE/Institut Agro, Université de Montpellier, 2 Place Pierre Viala, Montpellier, Cedex 2, 34060, France. benjamin.peret@cnrs.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White lupin (Lupinus albus) is a legume species that develops two remarkable root adaptations to nutrient limitation: nitrogen-fixing nodules and dense cluster roots specialized for phosphate acquisition. These traits, together with the species' agronomic relevance and strong developmental plasticity, make white lupin a powerful model for studying local and systemic regulation of root development under nutrient stress. This chapter provides a comprehensive collection of experimental procedures designed to investigate cluster root formation, nodulation, and associated physiological responses at both cellular and whole-plant levels. We describe optimized hydroponic culture systems that allow precise control of nitrogen and phosphate availability, together with reliable seed sterilization and germination procedures. We present a robust protocol for Agrobacterium rhizogenes-mediated hairy-root transformation to investigate gene function in root tissues. A controlled nodulation assay using Bradyrhizobium lupini enables reproducible symbiotic infection and nodule development. A grafting method is also provided to dissect local versus systemic contributions to root architectural responses. Finally, we detail three in situ physiological assays-phosphatase activity, ferric reductase activity, and proton efflux-that collectively allow the visualization of key functional traits associated with nutrient foraging. Together, these protocols provide an integrated toolkit for exploring the developmental and physiological mechanisms underpinning root plasticity and symbiotic regulation in white lupin.

Indexed as

LupinusPlant RootsAgrobacteriumHydroponicsNitrogenPhosphatesPlant Root NodulationSymbiosisTransformation, GeneticNitrogenPhosphatesBradyrhizobium lupiniCluster rootsGrafting techniqueHairy-root transformationHydroponic cultureNodulationPhosphate deficiencyPhysiological assaysRoot plasticityWhite lupin

Identifiers

PMID42814349

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.