Evidence map›Paper›PMID 42806620›Full record

ArticleJournal of computational chemistry2026

Application of the String Method to Determine the Ambimodal Nature of Transition States in Bifurcation Reactions.

Keita Yamaki, Hayato Yamada, Daichi Okamoto, Shoto Nakagawa, Toshiyuki Takayanagi

Abstract read
In one paragraph

Article in Journal of computational chemistry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Keita YamakiDepartment of Chemistry, Saitama University, Saitama, Japan.ORCID https://orcid.org/0009-0007-2586-8059
Hayato YamadaDepartment of Chemistry, Saitama University, Saitama, Japan.
Daichi OkamotoDepartment of Chemistry, Saitama University, Saitama, Japan.
Shoto NakagawaDepartment of Chemistry, Saitama University, Saitama, Japan.ORCID https://orcid.org/0009-0005-9276-1601
Toshiyuki TakayanagiDepartment of Chemistry, Saitama University, Saitama, Japan.ORCID https://orcid.org/0000-0003-0563-9236

Funding

Institute for Quantum Chemical ExplorationJapan Society for the Promotion of Science JP25K08573
6 · The paper itself

Abstract

Recent quantum chemical studies have revealed that a wide range of organic reactions exhibit post-transition-state bifurcation (PTSB), in which a single transition state (TS) leads directly to two or more distinct products along barrierless downhill pathways. Such TSs are commonly referred to as ambimodal TSs. In contrast, conventional intrinsic reaction coordinate (IRC) calculations typically connect the TS to only one of the possible products and therefore fail to identify alternative non-IRC products. To assess the ambimodal character of TSs in PTSB reactions, we analyzed relaxed pathways connecting a TS directly to a non-IRC product using the double-ended string method. Application of this approach to a total of 33 reaction systems, including pericyclic reactions (among them two trifurcation systems) and non-pericyclic reactions, enabled unambiguous classification of TS-product connections as either a static downhill connection or a static small-barrier connection, depending on whether an energy maximum exists below the TS. The proposed method provides a practical and robust tool for the static topological analysis of PTSB reactions and serves as an effective complement to on-the-fly dynamical trajectory simulations.

Identifiers

PMID42806620
PMCPMC13620280

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.