Evidence map›Paper›PMID 42806510›Full record

ReviewMicrobiologyOpen2026

From Rhizosphere to Resistance: Microbe-Plant Interactions in Eco-Smart Biocontrol.

Shilpy Singh, Varun Kumar Sharma, Dharmsheel Shrivastav, Jayant M Kushwaha, Manoj Kumar Mishra, Mirza Masroor Ali Beg

Abstract readReview
In one paragraph

Review in MicrobiologyOpen, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shilpy SinghDepartment of Biotechnology and Microbiology, School of Sciences, Noida International University, Greater Noida, Uttar Pradesh, India.ORCID https://orcid.org/0000-0003-2274-9090
Varun Kumar SharmaDepartment of Biotechnology and Microbiology, School of Sciences, Noida International University, Greater Noida, Uttar Pradesh, India.ORCID https://orcid.org/0000-0001-8575-6939
Dharmsheel ShrivastavDepartment of Biotechnology and Microbiology, School of Sciences, Noida International University, Greater Noida, Uttar Pradesh, India.ORCID https://orcid.org/0000-0002-2022-3290
Jayant M KushwahaDepartment of Biotechnology and Microbiology, School of Sciences, Noida International University, Greater Noida, Uttar Pradesh, India.ORCID https://orcid.org/0009-0000-8320-9034
Manoj Kumar MishraDepartment of Biotechnology, SR Institute of Management & Technology, Lucknow, Uttar Pradesh, India.ORCID https://orcid.org/0000-0001-7836-6254
Mirza Masroor Ali BegFaculty of Medicine, Ala-Too International University, Bishkek, Kyrgyzstan.ORCID https://orcid.org/0000-0002-4519-721X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The increasing limitations of chemical pesticides such as environmental pollution, pathogen resistance, and threats to human and ecosystem health have increased the demand for sustainable, biologically based crop protection methods. Eco-smart biocontrol has emerged as a game-changing paradigm that uses beneficial microorganisms associated with plants to suppress phytopathogens, boost plant immunity, and make agroecosystems more resilient over time. Moving beyond traditional single-strain biocontrol, eco-smart biocontrol integrates multi-omics discovery, artificial intelligence-assisted predictive microbiome design, and dynamic rhizosphere ecology. This review brings together ecological, molecular, and technological dimensions of eco-smart biocontrol, focusing on the rhizosphere as a dynamic hotspot for plant-microbe interactions. We investigate rhizosphere microbiome assembly and demonstrate the preferential recruitment of beneficial bacteria, fungi, actinomycetes, and mycorrhizal symbionts by plant root exudates. Moreover, the review highlights the impact of innovations in multi-omics techniques (metagenomics, transcriptomics, proteomics, and metabolomics), systems biology, and artificial intelligence on microbial biocontrol agent discovery, functional validation, and predictive design. Examples from cereal crops, legumes, and horticulture crops indicate that the application of beneficial microbial inoculants can significantly lower the burden of pests and diseases, enhance crop productivity, and fit perfectly within an integrated pest management system. Lastly, we critically analyze the main challenges preventing large-scale adoption, such as inconsistent field performance, limited microbial survival and competitiveness, and comparative regulatory frameworks across global markets. Ultimately, eco-smart microbial biocontrol combines mechanistic insights with omics-driven discovery, artificial intelligence (AI)- assisted prediction, advanced formulation strategies, and field-level validation, creating a strong, scalable, and environmentally friendly framework for resilient, low-input agricultural systems.

Indexed as

Biological Control AgentsPlant DiseasesPlantsRhizosphereCrops, AgriculturalFungiMicrobiotaMultiomicsPest Control, BiologicalPlant RootsSoil MicrobiologyBiological Control Agentsartificial intelligence in agricultureeco‐smart biocontrolinduced systemic resistanceplant–microbe interactionsrhizosphere microbiome

Identifiers

PMID42806510
PMCPMC13620205

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.