Evidence map›Paper›PMID 42797867›Full record

ArticleViruses2026

Cervicovaginal Virome Restructuring Associated with HPV Status, Bacterial Dysbiosis, and Cervical Cytological Abnormalities.

Almagul Kushugulova, Nazira Kamzayeva, Samat Kozhakhmetov, Elizaveta Vinogradova, Zharkyn Jarmukhanov, Nurislam Mukhanbetzhanov, Artur Kovenskiy, Alibek Kossumov, Aidana Rakhmankulova, Talshyn Ukybassova

Abstract read
In one paragraph

Article in Viruses, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Almagul KushugulovaLaboratory of Microbiome, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Block S1, Astana 010000, Kazakhstan.ORCID 0000-0001-9479-0899
Nazira KamzayevaClinical Academic Department of Women's Health, Corporate Fund "University Medical Center", Nazarbayev University, Turan Ave., 32, Astana 010000, Kazakhstan.
Samat KozhakhmetovLaboratory of Microbiome, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Block S1, Astana 010000, Kazakhstan.
Elizaveta VinogradovaLaboratory of Microbiome, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Block S1, Astana 010000, Kazakhstan.ORCID 0009-0003-1845-2726
Zharkyn JarmukhanovLaboratory of Microbiome, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Block S1, Astana 010000, Kazakhstan.
Nurislam MukhanbetzhanovLaboratory of Microbiome, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Block S1, Astana 010000, Kazakhstan.
Artur KovenskiyLaboratory of Microbiome, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Block S1, Astana 010000, Kazakhstan.ORCID 0009-0001-5608-2469
Alibek KossumovLaboratory of Microbiome, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Block S1, Astana 010000, Kazakhstan.ORCID 0000-0001-7827-6697
Aidana RakhmankulovaLaboratory of Microbiome, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Block S1, Astana 010000, Kazakhstan.ORCID 0009-0001-3119-0738
Talshyn UkybassovaClinical Academic Department of Women's Health, Corporate Fund "University Medical Center", Nazarbayev University, Turan Ave., 32, Astana 010000, Kazakhstan.

Funding

Ministry of Science and Higher Education of the Republic of Kazakhstan BR24992853
6 · The paper itself

Abstract

The cervicovaginal virome remains poorly characterized in relation to human papillomavirus (HPV) infection and bacterial community structure. We performed shotgun metagenomic sequencing of 311 cervicovaginal specimens from a Kazakhstani cohort spanning seven groups defined by HPV status and cervical cytology. Viral community composition differed according to HPV status, with increasing representation of the oncogenic Alphapapillomavirus 9 clade across more abnormal cytological categories. Predicted phage functional profiles also differed between NILM HPV-positive and NILM HPV-negative women. Integrase, excisionase, transcriptional repressor, anti-repressor Ant, and amidase annotations showed differential prevalence after false-discovery-rate correction. Auxiliary metabolic and host-interaction genes associated with nucleotide metabolism, DNA modification, anti-restriction functions, and toxin-antitoxin systems were also differentially represented. Stratification by bacterial community state type revealed contrasting predicted functional repertoires, with toxin-antitoxin-associated annotations enriched in Lactobacillus crispatus-dominated communities and anti-restriction-associated annotations enriched in Gardnerella vaginalis-dominated communities. These findings identify associations between HPV status, bacterial community structure, and cervicovaginal viral composition and predicted phage functions. Longitudinal and experimental studies are required to determine the directionality and biological activity of these associations.

Indexed as

Cervix UteriDysbiosisHuman Papillomavirus VirusesPapillomavirus InfectionsVaginaViromeBacteriaBacteriophagesFemaleHumansMetagenomicsMicrobiotaPapillomaviridaeauxiliary metabolic genesbacteriophagecervical carcinogenesiscervicovaginal viromeHPVphageomeprophage induction

Identifiers

PMID42797867
PMCPMC13611935

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.