Evidence map›Paper›PMID 42793201›Full record

ArticleBiomolecules2026

Integrative Transcriptomics Reveals a Mitochondria-Related Gene Signature in Periodontitis.

Siyuan Wu, Miaomiao Feng, Mengyao Liu, Qing Zhang, Gaixin Xu, Mengzhen Gao, Cory J Xian, Hongli Chen, Yuankun Zhai

Abstract read
In one paragraph

Article in Biomolecules, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Siyuan WuSchool of Stomatology, Henan University, Kaifeng 475000, China.ORCID 0009-0007-9394-5511
Miaomiao FengSchool of Stomatology, Henan University, Kaifeng 475000, China.
Mengyao LiuSchool of Stomatology, Henan University, Kaifeng 475000, China.
Qing ZhangSchool of Stomatology, Henan University, Kaifeng 475000, China.
Gaixin XuSchool of Stomatology, Henan University, Kaifeng 475000, China.
Mengzhen GaoSchool of Stomatology, Henan University, Kaifeng 475000, China.
Cory J XianSchool of Pharmacy and Biomedical Sciences, College of Health, Adelaide University, Adelaide City Campus, Adelaide, SA 5005, Australia.
Hongli ChenSchool of Stomatology, Henan University, Kaifeng 475000, China.
Yuankun ZhaiSchool of Stomatology, Henan University, Kaifeng 475000, China.ORCID 0000-0001-8156-1368

Funding

Education Department of Henan Province No. 25A320004Henan Science and Technology Department Nos. 232102310249, 242102310376, and 232102310320the Foundation for Young Scholars of the School of Stomatology, Henan University No. HUSSYS2024005the Foundation of Science and Technology Department of Kaifeng City Nos. 2207012, 2203015, and 2203018
6 · The paper itself

Abstract

Mitochondrial dysfunction contributes to periodontal inflammation and tissue destruction, yet the mitochondria-related transcriptional changes associated with periodontitis remain incompletely characterized. Using an integrative bioinformatics study design with experimental validation in cellular and animal models, we sought to identify a mitochondria-related gene signature in affected periodontal tissues and evaluate selected candidates experimentally. Differential expression analysis and weighted gene co-expression network analysis of GSE16134 were integrated with MitoCarta3.0 annotation. Candidate genes were evaluated using 101 feature-selection and classification combinations across GSE16134, GSE10334, GSE33774, and GSE173078, followed by functional enrichment, pathway-level analysis, and immune-cell deconvolution. Selected candidates were assessed by reverse-transcription quantitative polymerase chain reaction in lipopolysaccharide-stimulated RAW 264.7 macrophages and by immunohistochemistry in a ligature-induced rat periodontitis model. The integrated analysis identified 25 candidate genes. A backward stepwise generalized linear model combined with random forest selected

Indexed as

MitochondriaPeriodontitisTranscriptomeAnimalsComputational BiologyGene Expression ProfilingGene Regulatory NetworksMaleMiceRatsRats, Sprague-DawleyRAW 264.7 CellsCBR3CYP24A1machine learningmitochondriaperiodontitisSLC25A45SSBP1transcriptomics

Identifiers

PMID42793201
PMCPMC13604177

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.