Evidence map›Paper›PMID 42788683›Full record

ArticleDatabase : the journal of biological databases and curation2026

I-NOWJ: adaptive context selection and knowledge-guided learning for substance use named entity recognition.

Quoc-Viet-Anh Tran, Gia-Bao Duong, Huu-Huy-Hoang Tran, Thi-Hai-Yen Vuong, Hoang-Quynh Le

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Quoc-Viet-Anh TranKnowledge Technology Laboratory, Faculty of Information Technology, VNU University of Engineering and Technology, 144 Xuan Thuy, Cau Giay, Hanoi 10000, Vietnam.ORCID 0009-0009-9859-4022
Gia-Bao DuongKnowledge Technology Laboratory, Faculty of Information Technology, VNU University of Engineering and Technology, 144 Xuan Thuy, Cau Giay, Hanoi 10000, Vietnam.ORCID 0009-0000-5431-9517
Huu-Huy-Hoang TranKnowledge Technology Laboratory, Faculty of Information Technology, VNU University of Engineering and Technology, 144 Xuan Thuy, Cau Giay, Hanoi 10000, Vietnam.ORCID 0009-0009-8341-9176
Thi-Hai-Yen VuongKnowledge Technology Laboratory, Faculty of Information Technology, VNU University of Engineering and Technology, 144 Xuan Thuy, Cau Giay, Hanoi 10000, Vietnam.ORCID 0000-0002-8019-7178
Hoang-Quynh LeKnowledge Technology Laboratory, Faculty of Information Technology, VNU University of Engineering and Technology, 144 Xuan Thuy, Cau Giay, Hanoi 10000, Vietnam.ORCID 0000-0002-1778-0600

Funding

Vietnam National Foundation for Science and Technology Development 102.05-2025.54
6 · The paper itself

Abstract

Substance use information in clinical narratives is clinically important but is typically documented in unstructured and informal text, making automatic extraction challenging, particularly in low-resource and non-English settings. The BioCreative IX ToxHabits shared task addresses this problem in Spanish clinical text by identifying substance use triggers and their arguments. In this paper, we introduce I-NOWJ, which addresses these challenges through two complementary strategies: a low-resource strategy based on domain knowledge expansion, controlled data augmentation with quality-aware self-training, and an adaptive context selection mechanism that determines the appropriate contextual scope for each instance. Experimental results on the ToxHabits benchmark show that I-NOWJ achieves an F1 score of 94.93% on trigger detection and 91.30% on argument extraction. These results demonstrate the effectiveness of knowledge-guided modelling and adaptive context selection for robust clinical named entity recognition in low-resource settings. Our implementation and resources are publicly available at: https://github.com/candleMind/toxhabit.

Indexed as

Data MiningMachine LearningSubstance-Related DisordersHumans

Identifiers

PMID42788683
PMCPMC13613236

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.