Evidence map›Paper›PMID 42780038›Full record

ArticlebioRxiv : the preprint server for biology2026

Genome-wide characterization of host factors involved in single-stranded RNA and DNA phage infection pathways.

Isabella Murray, Roniya Thapa Magar, Denish Piya, Hemaa Selvakumar, Lucas Moriniere, Sarshad Koderi Valappil, Madeline Svab, Jirapat Thongchol, Alexey Kazakov, Nathalie H Elisabeth and 11 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Isabella MurrayEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Roniya Thapa MagarEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Denish PiyaEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Hemaa SelvakumarEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0009-0008-8329-3385
Lucas MoriniereEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Sarshad Koderi ValappilEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Madeline SvabEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Jirapat ThongcholCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, USA.
Alexey KazakovEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Nathalie H ElisabethMolecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Mohamad AlayouniEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Prithvi Pal SinghComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Artur MuszyńskiComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0003-3497-9977
Parastoo AzadiComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Siân V OwenDivision of Genetics, Wadsworth Center, New York State Department of Health, Albany, New York, USA.
Junjie ZhangCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, USA.
Stephanie D FriedmanIndependent researcher, Pensacola, FL, USA.
Adam P ArkinEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-4999-2931
Adam M DeutschbauerEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Simon RouxEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-5831-5895
Vivek K MutalikEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0001-7934-0400

Funding

National Glycoscience Resource- CCRC Service and Training - NGlycoR@CCRCR24GM137782 · NIGMS · UNIVERSITY OF GEORGIA · PI Parastoo Azadi · 2020 to 2026
$5.2M
ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
RNA penetrations into bacteria.R01GM141659 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI ZHANG, JUNJIE · 2022 to 2025
$2.3M
NIGMS NIH HHS R01 GM129325NIGMS NIH HHS R01 GM141659NIGMS NIH HHS R24 GM137782
6 · The paper itself

Abstract

Single stranded RNA (ssRNA) and single stranded DNA (ssDNA) bacteriophages represent a key component of the global virome, yet the host genetic networks supporting their infection cycles remain poorly understood. Here, we present a comprehensive, genome-wide mapping of the genetic landscape regulating infection cycles for F pilus-dependent ssRNA and ssDNA phages in

Identifiers

PMID42780038
PMCPMC13596461

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.