Evidence map›Paper›PMID 42779927›Full record

ArticlemedRxiv : the preprint server for health sciences2026

Population-Scale Precision Safety in Oncology Reveals Clinical and Genetic Determinants of Systemic Therapy Toxicity.

Ziad Bakouny, X Alex Guo, Feiyang Huang, Saksham Mohan, Rohan Walser, Zeyun Lu, Tomin Perea-Chamblee, Lamiah Khan, Nishat Ahmed, Antonio Ocejo and 27 more

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Ziad BakounyDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-1906-5704
X Alex GuoDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Feiyang HuangDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Saksham MohanDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Rohan WalserDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Zeyun LuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
Tomin Perea-ChambleeDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Lamiah KhanDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Nishat AhmedDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Antonio OcejoDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
A Ari HakimiDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Neil ShahDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Martin H VossDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Kathryn C ArbourDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Yee-Ming Melody CheungDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Hassan AzhariDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
David M FaleckDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Rachel NiecDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Mark Ta DonoghueMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
John J OrgeraMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Aijazuddin SyedDepartment of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Michael F BergerHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Michele WatersDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Karl PichottaDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Christopher FongDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Justin JeeDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Nikolaus SchultzDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Deborah SchragDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Lonny YarmusDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Adam J SchoenfeldDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Alexander GusevDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
Ritesh R KotechaDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Robert J MotzerDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Craig B ThompsonDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Wesley TanseyDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jian Carrot-ZhangDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ed ReznikDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
The Center for Tumor-Immune Systems Biology at MSKCCU54CA274492 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Alexander Y Rudensky · 2022 to 2026
$16.3M
Probabilistic Multiscale Modeling of the Tumor MicroenvironmentR37CA271186 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Wesley Tansey · 2023 to 2026
$2.7M
NCI NIH HHS P30 CA008748NCI NIH HHS R37 CA271186NCI NIH HHS U54 CA274492
6 · The paper itself

Abstract

Treatment toxicity constrains the use of effective cancer therapies, but its clinical and genetic determinants remain poorly defined. We developed a large language model-based approach to produce MSK-Tox, a pan-cancer resource capturing the incidence, temporality, and grade of toxicity to anti-cancer therapy across more than 50,000 patients. Analysis of six representative adverse events-pneumonitis, adrenal insufficiency, liver toxicity, colitis, hyperthyroidism and hypothyroidism-revealed distinct toxicity landscapes shaped by cancer type, treatment regimen, and clinical context. Pretreatment clinical features enabled individualized prediction of toxicity risk across adverse events, supporting risk assessment before therapy initiation. Beyond clinical predictors, we identified two modes of germline susceptibility to treatment toxicity: an organ-intrinsic mode, in which germline variation confers risk across systemic therapies, exemplified by a regulatory variant near

Identifiers

PMID42779927
PMCPMC13596667

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.