Evidence map›Paper›PMID 42779668›Full record

ArticlebioRxiv : the preprint server for biology2026

Structural basis of diverse antibody recognition of conserved coronavirus spike S2 epitopes that contribute to protective immunity.

Adonis A Rubio, Virginia Crivelli, Václav Hönig, Monika Čížková, Tomás Cervantes Rincón, Morgan E Abernathy, Megan K Parada, Danielle Vahdat, Yu E Lee, Michael Eso and 15 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Adonis A RubioStanford Biosciences, Stanford School of Medicine; Stanford, CA, USA.ORCID 0000-0003-3676-4283
Virginia CrivelliInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Václav HönigInstitute of Parasitology, Biology Centre of the Czech Academy of Sciences; Ceske Budejovice, Czech Republic.
Monika ČížkováInstitute of Parasitology, Biology Centre of the Czech Academy of Sciences; Ceske Budejovice, Czech Republic.
Tomás Cervantes RincónInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Morgan E AbernathyDepartment of Biology, Stanford University; Stanford, CA, USA.
Megan K ParadaDepartment of Biology, Stanford University; Stanford, CA, USA.
Danielle VahdatDepartment of Biology, Stanford University; Stanford, CA, USA.
Yu E LeeDepartment of Biology, Stanford University; Stanford, CA, USA.
Michael EsoDepartment of Biology, Stanford University; Stanford, CA, USA.
Jasmine CantergianiInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Simone MoroInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
David JarrossayInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Concetta GuerraInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Benedetta CenaInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Mihai MinculescuInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Vaiva GradauskaiteInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Maira BiggiogeroClinical Research Unit, Clinica Luganese Moncucco; Lugano, Switzerland.
Veronica CalvarusoClinical Research Unit, Clinica Luganese Moncucco; Lugano, Switzerland.
Alessandra F PellandaClinical Research Unit, Clinica Luganese Moncucco; Lugano, Switzerland.
Andrea CavalliInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Christian GarzoniInternal Medicine and Infectious Diseases, Clinica Luganese Moncucco; Lugano, Switzerland.
Martin PalusInstitute of Parasitology, Biology Centre of the Czech Academy of Sciences; Ceske Budejovice, Czech Republic.
Davide F RobbianiInstitute for Research in Biomedicine, Università della Svizzera italiana; Bellinzona, Switzerland.
Christopher O BarnesDepartment of Biology, Stanford University; Stanford, CA, USA.ORCID 0000-0003-2754-5951

Funding

University of Washington Arboviral Research Network (UWARN)U01AI151698 · NIAID · UNIVERSITY OF WASHINGTON · PI Michael Gale, PETER MACGARR RABINOWITZ · 2020 to 2026
$13.3M
NIAID NIH HHS U01 AI151698
6 · The paper itself

Abstract

Conserved epitopes within the coronavirus spike S2 domain elicit broadly reactive antibodies, yet many characterized responses show limited neutralizing and variable protective activity, leaving their contribution to antiviral immunity unclear. Building on our previous mapping of evolutionarily conserved spike "coldspots", we isolated human monoclonal antibodies targeting four conserved epitopes in the spike S2 domain: the internal fusion peptide (iFP), the central helix (CH), the connector domain (CD), and a membrane-proximal epitope in the heptad repeat 2 that we term the lower stalk (LS). A crystal structure of an LS-directed antibody defined a previously unresolved mode of antibody recognition of this membrane-proximal epitope, while cryogenic electron microscopy (cryo-EM) structures revealed that genetically diverse CH-specific antibodies use distinct binding modes to converge on conserved features of the prefusion S2 apex. Despite minimal neutralizing activity, CH- and LS-directed antibodies exhibited distinct antiviral functions. LS-directed antibodies mediated Fcγ receptor-dependent effector activity

Identifiers

PMID42779668
PMCPMC13596270

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.