Evidence map›Paper›PMID 42773127›Full record

ArticleNature communications2026

Transposon end recognition and excision mechanisms of type I-F CRISPR-associated transposases.

Mateusz Walter, Giada Finocchio, Seraina Oberli, Iana C Hammerschmid, George D Lampe, Julia Karan, Thomas Swartjes, Samuel H Sternberg, Martin Jinek, Irma Querques

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Mateusz Walter *Max Perutz Labs, Vienna BioCenter, Vienna, Austria.ORCID 0009-0001-7023-4545
Giada Finocchio *Department of Biochemistry, University of Zurich, Zurich, Switzerland.ORCID 0000-0001-6905-9308
Seraina Oberli *Department of Biochemistry, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-3568-7637
Iana C HammerschmidMax Perutz Labs, Vienna BioCenter, Vienna, Austria.ORCID 0009-0003-6670-6196
George D LampeDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, USA.ORCID 0000-0002-2873-2372
Julia KaranMax Perutz Labs, Vienna BioCenter, Vienna, Austria.ORCID 0009-0005-8284-7225
Thomas SwartjesMax Perutz Labs, Vienna BioCenter, Vienna, Austria.ORCID 0000-0001-7528-5483
Samuel H SternbergDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, USA.ORCID 0000-0001-8240-9114
Martin JinekDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-7601-210X
Irma QuerquesMax Perutz Labs, Vienna BioCenter, Vienna, Austria. irma.querques@univie.ac.at.ORCID 0000-0003-1113-2773

Funding

Center for Genomic Editing and Recording: Development and Application of Next-Generation Genome and Epigenome Editing Methods to Advance the Study and Treatment of Human DiseaseRM1HG009490 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI Brittany S. Adamson, Martin Joseph Ankrah Aryee · 2017 to 2026
$22.7M
ePACE: automation platforms for adaptable and scalable continuous evolution of biomolecules with therapeutic potentialR01EB027793 · NIBIB · BROAD INSTITUTE, INC. · PI Ahmad Samir Khalil, DAVID R LIU · 2019 to 2026
$6.1M
A high-performance and versatile technology for precision microbiome engineeringR01EB031935 · NIBIB · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Samuel Henry Sternberg, Harris H Wang · 2021 to 2026
$3.3M
Leveraging Programmable Integrases for Human Genome EngineeringDP2HG011650 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI STERNBERG, SAMUEL HENRY · 2020 to 2020
$2.4M
EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 101115765 BROADCASTEC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 820152 CRISPR2.0NHGRI NIH HHS DP2 HG011650NHGRI NIH HHS RM1 HG009490NIBIB NIH HHS R01 EB027793NIBIB NIH HHS R01 EB031935Österreichischen Akademie der Wissenschaften (Austrian Academy of Sciences) DOC fellowshipSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 320030-228089U.S. Department of Health & Human Services | National Institutes of Health (NIH) DP2HG011650U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01EB027793U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01EB031935U.S. Department of Health & Human Services | National Institutes of Health (NIH) RM1HG009490Vallee Foundation (Bert L. & N. Kuggie Vallee Foundation) Vallee Scholar Award
6 · The paper itself

Abstract

CRISPR-associated transposons (CASTs) are Tn7-like elements that have co-opted RNA-guided CRISPR effectors for targeted DNA insertion. CASTs have been adapted as genome editing tools for programmable, site-specific integration. Among them, the type I-F system from Pseudoalteromonas (PseCAST) shows exceptionally robust activity in human cells, yet its mechanistic basis remains poorly understood. Here, we present structural and biochemical analysis of the PseCAST transposase TnsAB. Biochemical reconstitution of transposon DNA excision defines key characteristics of the transposition mechanism. Cryogenic electron microscopy (cryo-EM) structures of PseTnsAB paired-end complexes reveal molecular determinants of transpososome assembly, transposon end recognition and cleavage. We validate these findings using biochemical and in vivo assays of structure-based transposase mutants, and provide mechanistic insights into the enhanced activity of a laboratory-evolved TnsAB variant. Together, our studies highlight molecular features underlying the efficiency of natural and engineered type I-F transposases and establish a mechanistic framework for their continued rational optimization.

Indexed as

Bacterial ProteinsCRISPR-Cas SystemsDNA Transposable ElementsTransposasesCryoelectron MicroscopyHumansModels, MolecularBacterial ProteinsDNA Transposable ElementsTransposases

Identifiers

PMID42773127
PMCPMC13598128

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.