Evidence map›Paper›PMID 42771157›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2027

Disruption of Chlamydia trachomatis Essential Genes Using DOPE (Dependence on Plasmid-Mediated Expression).

Yuxuan Wang, Huizhou Fan

Abstract read
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Article in Methods in molecular biology (Clifton, N.J.), 2027. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yuxuan WangDepartment of Pharmacology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, 08820, USA.
Huizhou FanDepartment of Pharmacology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, 08820, USA. fanhu@rwjms.rutgers.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe in detail an experimental strategy, DOPE (Dependence On Plasmid-mediated Expression), to enable disruption of an essential chlamydial gene. A wild-type Chlamydia trachomatis strain is first transformed with a β-lactamase-selectable plasmid carrying a copy of the gene under the inducible control of an anhydrotetracycline (ATC)-responsive promoter. Transformants are selected under permissive conditions in the absence of ATC to establish stable plasmid maintenance. The resulting chlamydiae are subsequently transformed with a suicide plasmid encoding a group II intron engineered to target the chromosomal copy of the gene. Secondary transformants with the intron inserted into the chromosomal locus are then selected with spectinomycin in the presence of ATC to induce expression of the plasmid-encoded allele. This protocol thus produces a conditional knockout strain in which expression of the essential gene is inducibly controlled by ATC so that its function in chlamydial growth and developmental progression can be delineated.

Indexed as

Chlamydia trachomatisGene Knockout TechniquesGenes, EssentialPlasmidsGene Expression Regulation, BacterialIntronsMutagenesis, InsertionalPromoter Regions, GeneticChlamydia geneticsConditional complementationConditional knockoutDOPEEssential genesGene disruptionGene inactivationInsertional mutagenesisIntron mutagenesisTargetron mutagenesis

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.