Evidence map›Paper›PMID 42770240›Full record

ReviewActa crystallographica. Section D, Structural biology2026

A short history of Auto-Rickshaw.

Santosh Panjikar, Victor Lamzin, Paul A Tucker, Manfred S Weiss

Abstract readHistorical ArticleReview
In one paragraph

Review in Acta crystallographica. Section D, Structural biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Santosh PanjikarANSTO, Australian Synchrotron, 800 Blackburn Road, Clayton, Victoria 3168, Australia.ORCID 0000-0001-7429-3879
Victor LamzinEuropean Molecular Biology Laboratory, Hamburg Unit, Hamburg, Germany.ORCID 0000-0002-6058-7793
Paul A TuckerEuropean Molecular Biology Laboratory, Heidelberg and Hamburg Units, Germany.
Manfred S WeissMacromolecular Crystallography, Helmholtz-Zentrum Berlin, Albert-Einstein-Strasse 15, 12489 Berlin, Germany.ORCID 0000-0002-2362-7047

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auto-Rickshaw was developed in the early 2000s at EMBL Hamburg as an automated macromolecular structure-determination platform for crystallography and structural biology. Its initial motivation was to provide beamline users with rapid feedback on whether diffraction data were sufficient for structure solution. The platform was not merely a wrapper around existing crystallographic programs; it encoded the expert decisions needed to select phasing, density-modification, model-building and refinement protocols according to the information available from the experiment. Since its first publication in 2005, Auto-Rickshaw has supported a broad range of experimental and model-based strategies, including SAD, MAD, SIR, SIRAS, RIP, molecular replacement and hybrid approaches such as MRSAD. A central feature was the integration of the SHELX programs, particularly SHELXC, SHELXD and SHELXE, whose speed, robustness and command-line design made them especially suitable for automated pipelines. This review gives a brief historical account of Auto-Rickshaw, the beamline context in which it emerged, the design principles that shaped it and the role of SHELX programs in its phasing architecture. It also considers the broader legacy of Auto-Rickshaw as a bridge between crystallographic expertise and automated, reproducible structure solution. Finally, the review places Auto-Rickshaw in the current landscape of synchrotron technologies, high-throughput structural biology, containerized deployment, predicted structural models and AI-assisted decision making, where reliable automation remains essential.

Indexed as

SoftwareCrystallography, X-RayHistory, 20th CenturyHistory, 21st CenturyMacromolecular SubstancesModels, MolecularMacromolecular SubstancesautomationAuto-Rickshawexperimental phasingmacromolecular crystallographymolecular replacementMRSADSHELXSHELXCSHELXDSHELXEstructural biologysynchrotron beamlines

Identifiers

PMID42770240
PMCPMC13632750

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.