Evidence map›Paper›PMID 42762259›Full record

ArticleJournal of molecular evolution2026

Genomic Codon Usage is Structurally Consistent with First-Classness Across the Tree of Life.

Douglas J Huntington Moore

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Article in Journal of molecular evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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4 · The record

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5 · Who and what money

Authors and funding

1 author.

Douglas J Huntington MooreIndependent Researcher, Brisbane, Australia. djhmoore@gmail.com.ORCID https://orcid.org/0000-0001-7170-5778

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-scale codon usage data from 70,950 species spanning the tree of life allow a test of whether the standard genetic code's 21-family degeneracy partition is structurally consistent with the First-Classness (FC) framework, which derives that partition from conformal completion constraints on a four-element dispositional algebra without biological input. We report three findings. First, within-family codon usage uniformity, measured by coefficient of variation, follows a specific ordering across family sizes-2-fold < 4-fold < Ser 6-fold < 3-fold < Leu/Arg 6-fold-that is consistent with the architectural constraints of the FC-derived partition rather than being a simple monotonic function of family size. Second, the three split six-fold families (serine, leucine, arginine) exhibit four-codon sub-block dominance-pooled two-to-four ratios of 0.30--0.56-in archaea, bacteria and eukarya alike, though the strength of the dominance, most markedly for arginine, varies among the domains. Third, a family-balanced global FC ratio, tested against a null model preserving family-size architecture while randomising codon assignment, shows no separable statistical signal ([Formula: see text], [Formula: see text]); the possible interpretations, including limited sensitivity of the statistic at this level of aggregation and non-separability of the partition from the frequencies it governs, are discussed.

Indexed as

Codon UsageArchaeaBacteriaCodonEukaryotaEvolution, MolecularGenetic CodeGenomeModels, GeneticPhylogenyCodonCodon usageDegeneracyFirst-ClassnessGenetic codeStarting-point invariance

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.