ArticleJournal of molecular evolution2026
Genomic Codon Usage is Structurally Consistent with First-Classness Across the Tree of Life.
Article in Journal of molecular evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Genome-scale codon usage data from 70,950 species spanning the tree of life allow a test of whether the standard genetic code's 21-family degeneracy partition is structurally consistent with the First-Classness (FC) framework, which derives that partition from conformal completion constraints on a four-element dispositional algebra without biological input. We report three findings. First, within-family codon usage uniformity, measured by coefficient of variation, follows a specific ordering across family sizes-2-fold < 4-fold < Ser 6-fold < 3-fold < Leu/Arg 6-fold-that is consistent with the architectural constraints of the FC-derived partition rather than being a simple monotonic function of family size. Second, the three split six-fold families (serine, leucine, arginine) exhibit four-codon sub-block dominance-pooled two-to-four ratios of 0.30--0.56-in archaea, bacteria and eukarya alike, though the strength of the dominance, most markedly for arginine, varies among the domains. Third, a family-balanced global FC ratio, tested against a null model preserving family-size architecture while randomising codon assignment, shows no separable statistical signal ([Formula: see text], [Formula: see text]); the possible interpretations, including limited sensitivity of the statistic at this level of aggregation and non-separability of the partition from the frequencies it governs, are discussed.
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