Evidence map›Paper›PMID 42756716›Full record

ArticleISME communications2026

Overcoming gelling agent-derived inhibitory factors enables the cultivation of fastidious nitrifiers on solid media.

Zhiwei Peng, Atsushi Tamura, Tomonori Kindaichi, Akiyoshi Ohashi, Setsu Kato, Yutaka Nakashimada, Yoshiteru Aoi

Abstract read
In one paragraph

Article in ISME communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhiwei PengGraduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima 739-8530, Japan.ORCID https://orcid.org/0009-0002-3202-6259
Atsushi TamuraGraduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima 739-8530, Japan.
Tomonori KindaichiGraduate School of Advanced Science and Engineering, Hiroshima University, Hiroshima 739-8527, Japan.
Akiyoshi OhashiGraduate School of Advanced Science and Engineering, Hiroshima University, Hiroshima 739-8527, Japan.
Setsu KatoGraduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima 739-8530, Japan.
Yutaka NakashimadaGraduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima 739-8530, Japan.
Yoshiteru AoiGraduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima 739-8530, Japan.ORCID https://orcid.org/0000-0003-4038-7214

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrification is a key process in the global nitrogen cycle, yet the physiological characterization of nitrifiers remains limited due to their low culturability. Although culture-independent approaches have provided important ecological insights, they do not fully resolve the physiological properties of nitrifying microorganisms. Here, we show that common gelling agents (agar, agarose, and gellan gum) contain toxic substances that inhibit the growth of diverse nitrifying microorganisms as well as some heterotrophic bacteria. These inhibitory substances appear to be generated during autoclaving and act via mechanisms distinct from previously reported hydrogen peroxide. Removal of these inhibitory factors using a simple washing strategy enables colony formation in recalcitrant nitrifiers, including

Indexed as

gelling agentsmicrobial cultivationnitrifying microorganismsnon-colony-formingsolid mediumtoxicityuncultured microbes

Identifiers

PMID42756716
PMCPMC13584200

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.