Evidence map›Paper›PMID 42754635›Full record

ArticleNature computational science2026

Revisiting molecular descriptors with TDiMS for interpretable intramolecular interactions based on substructure pairs.

Lisa Hamada, Akihiro Kishimoto, Kohei Miyaguchi, Masataka Hirose, Junta Fuchiwaki, Indra Priyadarsini, Seiji Takeda

Abstract read
In one paragraph

Article in Nature computational science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lisa HamadaIBM Research, Chuo-ku, Japan. Lisa.Hamada@ibm.com.ORCID http://orcid.org/0009-0008-8939-4793
Akihiro KishimotoIBM Research, Chuo-ku, Japan.
Kohei MiyaguchiIBM Research, Chuo-ku, Japan.
Masataka HiroseJSR Corporation, Minato-ku, Japan.
Junta FuchiwakiJSR Corporation, Minato-ku, Japan.
Indra PriyadarsiniIBM Research, Chuo-ku, Japan.
Seiji TakedaIBM Research, Chuo-ku, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular descriptors play a crucial role in representing the structural features of molecules for machine learning-based physical property prediction. However, current descriptors either consider only local aspects of molecular structures or fail to effectively learn nonlocal structural features involving long-distance intramolecular interactions. Here, to address this issue, we present a descriptor named TDiMS. TDiMS effectively summarizes the enumerated pairwise topological distances between molecular substructures, thus capturing nonlocal interactions. Our evaluation shows that TDiMS successfully identifies essential features of large structures and outperforms other representative descriptors in predicting properties for which distances between substructures are a primary factor. In addition, these identified features are highly interpretable for experts in materials discovery.

Identifiers

PMID42754635
PMCPMC13593562

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.