Evidence map›Paper›PMID 42753721›Full record

ArticleMolecular cell2026

De novo-engineered guide RNA-directed transposition with TnpB-family proteins.

Richard D Schargel, Laura Chacon Machado, Shravanika Kumaran, Jordan E Thesier, Shreya S Krishnan, Alba Guarné, Joseph E Peters

Abstract read
In one paragraph

Article in Molecular cell, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Richard D SchargelDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Laura Chacon MachadoDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Shravanika KumaranDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Jordan E ThesierDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Shreya S KrishnanDepartment of Biochemistry and Centre de Recherche en Biologie Structurale, McGill University, Montreal, QC H3G 0B1, Canada.
Alba GuarnéDepartment of Biochemistry and Centre de Recherche en Biologie Structurale, McGill University, Montreal, QC H3G 0B1, Canada.
Joseph E PetersDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA. Electronic address: joe.peters@cornell.edu.

Funding

CRISPR-Cas-directed transposition in Tn7-like elementsR35GM152260 · NIGMS · CORNELL UNIVERSITY · PI Joseph E Peters · 2024 to 2026
$1.1M
NIGMS NIH HHS R35 GM152260
6 · The paper itself

Abstract

Programmable DNA integration using CRISPR-associated transposase elements (CASTs) offers powerful capabilities for genome engineering. The large single effector Cas12k CAST examples evolved from a minimal TnpB nuclease protein. Here, we engineer a de novo RNA-guided transposition systems in bacteria, where the single guide RNA effector components are repurposed nuclease-dead TnpB-family proteins. These compact systems mediate high-efficiency guide-RNA-directed DNA insertion with preserved orientation control, target immunity, and release of a host factor requirement and can be paired with an exonuclease domain to mediate cut-and-paste transposition. In this engineered context, the TnpB derivatives show features not predicted from the original enzymes, suggesting untapped avenues for improvement. In parallel, we show that mutations at the TniQ-TnsC interface in the Cas12k CAST system selectively attenuate off-site insertions while enhancing on-site activity. These results establish how Cas12 proteins and antecedent TnpB proteins can be engineered for high performance and specificity with guide-RNA-directed systems.

Indexed as

Bacterial ProteinsCRISPR-Associated ProteinsCRISPR-Cas SystemsDNA, BacterialDNA Transposable ElementsEscherichia coliRNA, Guide, CRISPR-Cas SystemsTransposasesModels, MolecularMutationBacterial ProteinsCRISPR-Associated ProteinsDNA, BacterialDNA Transposable ElementsRNA, Guide, CRISPR-Cas SystemsTransposasesCRISPR-Cas, programmable repressor, programmable nuclease, TnpB, transposon, gene integration, Cas12, Fanzor

Identifiers

PMID42753721
PMCPMC13587685

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.