Evidence map›Paper›PMID 42749731›Full record

ArticleNature communications2026

Core nucleosomes are refractory to lentiviral DNA integration.

Joshua Hope, Emma Punch, Nicola J Cook, Matthew R Singer, Dhira Joshi, Parmit K Singh, Andrea Nans, Nathan P Sweeney, Willem Vanderlinden, Alan N Engelman and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Joshua Hope *Chromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, UK. Joshua.Hope@strubi.ox.ac.uk.ORCID 0000-0003-2742-5538
Emma Punch *Chromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, UK.
Nicola J Cook *Chromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, UK.ORCID 0000-0002-2738-7976
Matthew R SingerChromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, UK.
Dhira JoshiChemical Biology Science Technology Platform, The Francis Crick Institute, London, UK.ORCID 0000-0001-8660-2528
Parmit K SinghDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-9657-2526
Andrea NansStructural Biology Science Technology Platform, The Francis Crick Institute, London, UK.ORCID 0000-0002-3791-2447
Nathan P SweeneyCell and Gene Therapy, Medicines Research Centre, GSK, Stevenage, UK.
Willem VanderlindenSchool of Physics and Astronomy, University of Edinburgh, Edinburgh, UK.
Alan N EngelmanDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-9709-2591
Peter CherepanovChromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, UK. Peter.Cherepanov@crick.ac.uk.ORCID 0000-0002-0634-538X

Funding

Project 3. IntegrationU54AI170791 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Peijun Zhang · 2022 to 2026
$30.6M
Biochemical Mechanism of HIV DNA IntegrationR37AI039394 · NIAID · DANA-FARBER CANCER INST · PI Alan N. Engelman · 2010 to 2026
$10.2M
Cancer Research UK (CRUK) CC2058NIAID NIH HHS R37 AI039394NIAID NIH HHS U54 AI170791RCUK | Medical Research Council (MRC) CC2058Royal Society RGS\R2\242466Royal Society of Edinburgh (RSE) 5624U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R37AI039394U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U54AI170791Wellcome Trust CC2058Wellcome Trust (Wellcome) CC2058
6 · The paper itself

Abstract

HIV-1 and other lentiviruses hijack the cellular chromatin-binding protein LEDGF/p75 to facilitate integration into active transcription units. However, the mechanism of chromatin engagement by lentiviral intasomes and the structural role of LEDGF/p75 in this process remain poorly understood. To address these gaps, we studied the activities of native HIV-1 preintegration complexes and in vitro-assembled lentiviral intasomes in the presence of chromatinized target DNA. While LEDGF/p75 was both essential and minimally sufficient to enhance lentiviral integration into chromatin containing histone H3 trimethylated on Lys36, it unexpectedly facilitated integration outside of the nucleosome core particles. LEDGF/p75 additionally inhibited integration into unmodified chromatin in a dose-dependent manner, promoting integration into naked DNA. To explore the structural foundation for these activities, we imaged maedi-visna virus intasomes saturated with LEDGF/p75 before and after strand transfer by cryogenic electron microscopy. The structures revealed that the host factor alters the target DNA binding platform of the lentiviral intasome, imposing significant constraints on the path and configuration of target DNA to impede nucleosome engagement. Our results establish the preference of lentiviral intasomes for linker DNA regions within H3K36Me3-enriched chromatin and show that LEDGF/p75 plays a specific structural role at the viral-host target DNA interface.

Indexed as

HIV-1NucleosomesVirus IntegrationVisna-maedi virusChromatinCryoelectron MicroscopyDNA, ViralHEK293 CellsHistone CodeHost-Pathogen InteractionsHumansIntercellular Signaling Peptides and ProteinsLentivirusChromatinDNA, ViralIntercellular Signaling Peptides and Proteinslens epithelium-derived growth factorNucleosomes

Identifiers

PMID42749731
PMCPMC13582839

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.