Evidence map›Paper›PMID 42749707›Full record

ArticleNature communications2026

Whole-brain, all-optical interrogation of neuronal dynamics underlying gut and vascular interoception in zebrafish.

Weiyu Chen, Ben James, Virginie M S Ruetten, Sambashiva Banala, Ziqiang Wei, Xueying Yang, Greg Fleishman, Igor Siwanowicz, Mikail Rubinov, Jeremy Delahanty and 6 more

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Weiyu Chen *Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Ben James *Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Virginie M S Ruetten *Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0003-0073-2861
Sambashiva BanalaJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-9463-7664
Ziqiang WeiJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-8694-1260
Xueying YangJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Greg FleishmanJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0003-1879-6521
Igor SiwanowiczJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Mikail RubinovDepartment of Biomedical Engineering, Vanderbilt, Nashville, TN, USA.
Jeremy DelahantyJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Mark C FishmanHarvard Stem Cell Institute, Harvard University, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-0033-541X
Florian EngertDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-8169-2990
Maneesh SahaniGatsby Computational Neuroscience Unit, University College London, London, UK.ORCID http://orcid.org/0000-0001-5560-3341
Luke D LavisJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-0789-6343
James E FitzgeraldJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-0949-4188
Misha B AhrensJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA. ahrensm@janelia.hhmi.org.ORCID http://orcid.org/0000-0002-3457-4462

Funding

National Science Foundation (NSF) DMS-2235451Simons Foundation MPTMPS-00005320
6 · The paper itself

Abstract

To select behaviors appropriate to their circumstances and needs, animals integrate information about the external environment with information about the state of their bodies, derived from sensing and processing internal signals (interoception). However, the brain-wide circuit activity underlying interoception and its integration with sensorimotor processing remains unclear, partly because of technical barriers to accessing whole-brain activity at the cellular level during physiological perturbations. We developed an all-optical system for whole-brain neuronal imaging in behaving larval zebrafish during optical uncaging of gut- or bloodstream-targeted nutrients and visuo-motor stimulation. Widespread neural activity throughout the brain encoded nutrient delivery, unfolding on multiple timescales across many peripheral and central regions. Evoked activity depended on delivery location and occurred in response to both amino acids and D-glucose, but not L-glucose. Many gut responsive neurons also responded to swimming and visual stimuli, with brainstem areas primarily integrating gut and motor signals and midbrain regions integrating jointly gut, visual, and motor signals. This platform links body-brain communication studies to brain-wide neural computation in awake, behaving vertebrates.

Indexed as

BrainGastrointestinal TractNeuronsZebrafishAmino AcidsAnimalsGlucoseLarvaPhotic StimulationSwimmingAmino AcidsGlucose

Identifiers

PMID42749707
PMCPMC13583002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.