Evidence map›Paper›PMID 42749436›Full record

ArticleJournal, genetic engineering & biotechnology2026

Unravelling the genomic potential of sponge-associated Streptomyces sp. BLC 17-3 from Indonesia for mannooligosaccharide production.

Nanik Rahmani, Annisyia Zarina Putri, Hana Nadhifah, Lina Herliana, Rike Rachmayati, Eva Agustriana, Siti Eka Yulianti, Nuryati, Elvi Yetti, Akhirta Atikana and 6 more

Abstract read
In one paragraph

Article in Journal, genetic engineering & biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Nanik RahmaniResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia; Research Collaboration Center for Marine Biomaterials, Universitas Padjadjaran, Jatinangor, West Java 45360, Indonesia. Electronic address: nani010@brin.go.id.
Annisyia Zarina PutriResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia.
Hana NadhifahResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia.
Lina HerlianaResearch Center for Genetic Engineering, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, Bogor 16911, Indonesia. Electronic address: lina008@brin.go.id.
Rike RachmayatiResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia. Electronic address: rike002@brin.go.id.
Eva AgustrianaResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia. Electronic address: evaa002@brin.go.id.
Siti Eka YuliantiResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia. Electronic address: Siti063@brin.go.id.
NuryatiDirectorate of Laboratory Management and Research Facilities, Deputy for Infrastructure Research and Innovation, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia. Electronic address: nury008@brin.go.id.
Elvi YettiResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia. Electronic address: elvi001@brin.go.id.
Akhirta AtikanaResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia. Electronic address: akhirta.atikana@brin.go.id.
Anisa Fitri RahayuResearch Center for Applied Microbiology, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, West Java 16911, Indonesia. Electronic address: anis034@brin.go.id.
Emma RochimaResearch Collaboration Center for Marine Biomaterials, Universitas Padjadjaran, Jatinangor, West Java 45360, Indonesia; Department of Fisheries, Faculty of Fishery and Marine Sciences, Universitas Padjadjaran, Jatinagor, Indonesia. Electronic address: emma.rochima@unpad.ac.id.
Shanti RatnakomalaResearch Center for Biosystematics and Evolution, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, Bogor 16911, Indonesia. Electronic address: shan001@brin.go.id.
Puspita LisdiyantiResearch Center for Biosystematics and Evolution, Research Organization of Life Sciences and Environment, National Research and Innovation Agency, Jl. Raya Bogor, KM. 46 Cibinong, Bogor 16911, Indonesia. Electronic address: pusp003@brin.go.id.
YopiDeputy for Regional Research and Innovation, National Research and Innovation Agency, Jakarta 10340, Indonesia. Electronic address: yopi003@brin.go.id.
Bambang PrasetyaResearch Center for Equipment Manufacturing Technology, Research Organization of Energy and Manufacturing, National Research and Innovation Agency (BRIN), Habibie Science and Technology Park Puspiptek, South Tangerang 15314, Indonesia. Electronic address: bambang.prasetya@brin.go.id.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This research aims to show the promising capacity of Streptomyces sp. BLC 17-3 to produce high β-mannanase enzymes and generate mannooligosaccharide (MOS) such as mannobiose, mannotriose, mannotetraose and mannopentaose when exposed to mannan polymers. Streptomyces sp. BLC 17-3 was isolated from the sponge (Rhabdastrella globostellata) Put4 obtained from the marine waters of Putus Island in Bitung, North Sulawesi, Indonesia. The characterization results showed that the peak enzyme activity was achieved at 50 mM sodium acetate, 6.0 pH, and 60 °C temperature on the seventh day of production with a value of 155.77 ± 3.21 U/mL. The SDS-PAGE and zymograms also showed that the size of the enzyme molecule was approximately ±34.8-49.1 kDa. Moreover, whole-genome sequencing was conducted to identify the genetic basis of MOS-synthesizing capabilities in the selected strain, followed by functional annotation of genes encoding mannan degradation and associated functions. The results showed an 8,248,862 Mb complete draft genome of the strain which comprised 111 predicted gene models. Gene annotation also provided important information about the location and function of protein-encoding genes. A total of 6 mannan degradation-related genes encoding mannanase-related metabolism were identified and the three-dimensional structures were predicted using AlphaFold 3. This characterization and modeling further enhanced the bioprospecting and development of this strain which exhibited efficient mannose metabolism. The results showed Streptomyces sp. BLC 17-3 as a promising microorganism for the future bioproduction of MOS which were discovered to have the capability of serving as a potential prebiotic substance to enhance digestion and promote health.

Indexed as

BioprospectingMannanaseMannooligosaccharideMarine actinomycetesWhole-genome sequencing

Identifiers

PMID42749436
PMCPMC13470192

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.