Evidence map›Paper›PMID 42747412›Full record

ArticleThe ISME journal2026

Context-dependent siderophore exploitability shapes microbial community structure.

Aileen Krüger, Seung-Hyun Paik, Michelle Bund, Matthias Pesch, Stephan Krueger, Benita Lückel, Athanasios Papadopoulos, Johanna Wiechert, Tanvir Hassan, Ulrike Weber and 9 more

Abstract read
In one paragraph

Article in The ISME journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Aileen KrügerInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.
Seung-Hyun PaikInstitute of Molecular Enzyme Technology, IMET, Faculty of Mathematics and Natural Sciences, Heinrich Heine University Düsseldorf, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.
Michelle BundInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.
Matthias PeschInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.
Stephan KruegerCEPLAS Metabolism and Metabolomics Laboratory, Cluster of Excellence on Plant Sciences (CEPLAS), Faculty of Mathematics and Natural Sciences, Heinrich Heine University Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany.
Benita LückelInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.
Athanasios PapadopoulosCenter for Structural Studies, Faculty of Mathematics and Natural Sciences, Heinrich Heine University Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany.
Johanna WiechertInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.
Tanvir HassanComputational Life Science, Department of Biology, RWTH Aachen University, 52074 Worringerweg 3, Aachen, Germany.
Ulrike WeberInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.
Romain AvellanInstitute of Biology, Leiden University, Sylviusweg 72, 2333 Leiden, Netherlands.
Sander H J SmitsCenter for Structural Studies, Faculty of Mathematics and Natural Sciences, Heinrich Heine University Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany.
Michael BottInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.
Ákos T KovácsInstitute of Biology, Leiden University, Sylviusweg 72, 2333 Leiden, Netherlands.
Philipp WesthoffCEPLAS Metabolism and Metabolomics Laboratory, Cluster of Excellence on Plant Sciences (CEPLAS), Faculty of Mathematics and Natural Sciences, Heinrich Heine University Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany.ORCID 0000-0002-3494-9420
Anna MatuszyńskaComputational Life Science, Department of Biology, RWTH Aachen University, 52074 Worringerweg 3, Aachen, Germany.
Dietrich KohlheyerInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.ORCID 0000-0001-6215-1857
Thomas DrepperInstitute of Molecular Enzyme Technology, IMET, Faculty of Mathematics and Natural Sciences, Heinrich Heine University Düsseldorf, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.ORCID 0000-0002-0096-8084
Julia FrunzkeInstitute of Bio- and Geosciences 1, IBG-1: Biotechnology, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.ORCID 0000-0001-6209-7950

Funding

Cluster of Excellence on Plant Sciences (CEPLAS) under Germany's Excellence Strategy EXC-2048/1 390686111Deutsche Forschungsgemeinschaft number 573727698EMBO Scientific Exchange Grant 12048European Research Council under the European Union's Horizon 2020 research and innovation program 101166968German Research Foundation (DFG) through the Collaborative Research Center 1535 Microbial Networking 45809666INST 208/761-1 FUGG
6 · The paper itself

Abstract

Siderophores are classically viewed as shared iron-scavenging public goods, yet their ecological roles in multispecies communities remain incompletely understood. Here, we establish a synthetic microbial community to dissect how different siderophores, their uptake compatibility and spatial structure shape iron competition. Using Corynebacterium glutamicum as a model, we show that this siderophore non-producer accesses diverse xenosiderophores, including enterobactin secreted by Escherichia coli. However, exploitation was constrained and co-cultures converged to stable compositions. Dose-response experiments combined with mathematical modelling indicated that the producer retains more effective access to enterobactin than the exploiter. The presence of Pseudomonas putida altered this interaction, as it exploited enterobactin while producing pyoverdine, a siderophore inaccessible to the other community members that restricted their iron access. Across different cultivation scales, community dynamics was strongly influenced by spatial organization and initial composition. These findings identify siderophores as context-dependent iron-allocation agents that can promote microbial coexistence or exclusion.

Indexed as

Corynebacterium glutamicumSiderophoresEnterobactinEscherichia coliIronOligopeptidesPseudomonas putidaEnterobactinIronOligopeptidespyoverdinSiderophoresCorynebacteriumenterobactinexploitationironmicrobial communitiesPseudomonaspublic goodpyoverdinsiderophoressingle cell analysis

Identifiers

PMID42747412
PMCPMC13634200

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.