ArticleAnimal genetics2026
Genome-Wide SNP Discovery and Population Genomic Characterisation in Indian Major Carp Labeo catla (Hamilton, 1822) Through Low-Depth Whole-Genome Resequencing.
Article in Animal genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Single nucleotide polymorphisms (SNPs) are key markers for population and conservation genetics in aquaculture species. Using low-depth whole-genome resequencing of 35 Labeo catla individuals from seven populations (three wild riverine, four hatchery), we generated the first genome-wide SNP catalogue for this Indian major carp. Filtering against the L. catla reference genome (GCA_012976165.1) yielded 2.05 million high-quality bi-allelic SNPs (467 291-1 221 268 per population), with 27 000 shared across all populations. Heterozygosity (He = 0.4477-0.4532) and nucleotide diversity (π = 0.4703-0.4816) were broadly comparable across populations. Pairwise F
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