Evidence map›Paper›PMID 42741800›Full record

ArticleBiology open2026

The de novo formation and maintenance of C. elegans lysosome-related organelles.

Madeline Daniel, Frances Parrott, Laura A Voss, Yoona Shim, Trent Nause, Bella Root, Tevere Loeb, Paige A Barta, Greg J Hermann

Abstract read
In one paragraph

Article in Biology open, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Madeline DanielDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.
Frances ParrottDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.
Laura A VossDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.
Yoona ShimDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.
Trent NauseDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.
Bella RootDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.
Tevere LoebDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.
Paige A BartaDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.
Greg J HermannDepartment of Biology, Lewis and Clark College, 615 S. Palatine Hill Rd., Portland, OR 97219, USA.ORCID 0000-0002-0278-6356

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
John S. Rogers Summer Research ProgramLewis and Clark CollegeNational Science Foundation MCB2051826NIH HHS P40 OD010440
6 · The paper itself

Abstract

Lysosome-related organelles (LROs) are cell-type-specific organelles derived from the endosomal system. Their lack of ubiquity requires that they be created during cell differentiation. To investigate how LROs are first formed, we characterized the biogenesis of Caenorhabditis elegans gut granules and found that these intestinally restricted LROs are generated de novo during a short period of early embryogenesis. Intriguingly, we found that gut granule number and size remain unchanged throughout the rest of embryonic development. The transition from formation to maintenance coincides with the loss of the GLO-1/Rab32 guanine nucleotide exchange factor (GEF) subunit CCZ-1 from gut granules. Our investigations manipulating the presence and activity of GLO-1/Rab32 reveal that LRO biogenesis remains active during embryogenesis when the steady-state number of gut granules does not change. These studies define a system where the de novo formation of LROs can be investigated and provide insights into the mechanisms maintaining LROs once they have been generated.

Indexed as

Caenorhabditis elegansLysosomesOrganelle BiogenesisOrganellesAnimalsCaenorhabditis elegans ProteinsEmbryonic DevelopmentGuanine Nucleotide Exchange FactorsCaenorhabditis elegans ProteinsGuanine Nucleotide Exchange FactorsC. elegansGut granulesLysosome-related organelles

Identifiers

PMID42741800
PMCPMC13617980

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.