ArticleJournal of chemical information and modeling2026
Autogenerating a Domain-Specific Question-Answering Data Set to Enable High-Performing Language Models for Magnetic Materials.
Article in Journal of chemical information and modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Domain-specific language models are attractive because they can be tailored to suit their users. However, the high-end computational resources needed to pretrain large language models (LLMs) by conventional methods tend to prohibit their development. Furthermore, there is a dearth of large, domain-specific, question-answering (QA) data sets to finetune LLMs for prompt engineering, even when computational resources can be found to pretrain LLMs. Our paper presents a method for autogenerating a data set of 168,080 domain-specific QA pairs relating to magnetic materials. We show how this can be employed to finetune LLMs for the downstream task of Question-Answering (QA) for the magnetic materials domain. We use the bidirectional encoder representations from transformers (BERT) architecture as our benchmark LLM to compare the relative performance of 6 LLMs. These include 3 vanilla (BERT-base-cased) LLMs that have been finetuned on various QA data sets (i) our domain-specific QA data set (MagQA); (ii) the Stanford Question-Answering Data set (SQuAD v2); (iii) our QA data set mixed with SQuAD v2. The other 3 (BERT-base-cased) LLMs have been subjected to domain-adaptive pretraining on a corpus of 97,308 magnetic papers prior to their finetuning on the same combination of QA data sets (i)-(iii). As well as our QA data set autogeneration pipeline, we show how our work can be extrapolated to the larger architectures of RoBERTa-base and DeBERTa-base. We also undertake an ablation study of the finetuning process using four sizes of QA data sets to gain insights into the quantity of data that are needed for sufficient domain-specification. The highest performing LLM was MagBERT_MagQA_Mixed, a vanilla BERT-base-cased LLM that had been finetuned on the combination of our autogenerated MagQA data set and SQuAD v2, achieving an F1 score of 78.43% and an exact-match score of 72.84% when tested on a manually annotated data set on magnetic materials. These results demonstrate that domain-specific BERT models only need to be finetuned from vanilla BERT models (i.e. no domain-adaptive pretraining is needed), pending the availability of sufficiently large, high-quality, domain-specific QA data sets that this work shows how to autogenerate.
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