Evidence map›Paper›PMID 42731351›Full record

ArticleNeoplasia (New York, N.Y.)2026

Integrated collagen architecture and composition improve risk stratification in triple-negative breast cancer.

Resul Ozbilgic, Berfin Dinc, Kavya Vipparthi, Darcie D Seachrist, Marlo Nicolas, Ruth A Keri, Xuefeng Liu, Murat Yildirim, Mihriban Karaayvaz

Abstract read
In one paragraph

Article in Neoplasia (New York, N.Y.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

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No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Resul OzbilgicDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA.
Berfin DincDepartment of Neurosciences, Cleveland Clinic, Cleveland, OH, USA.
Kavya VipparthiDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA.
Darcie D SeachristDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA.
Marlo NicolasDepartment of Pathology, Cleveland Clinic, Cleveland, OH, USA.
Ruth A KeriDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA; Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH, USA.
Xuefeng LiuDepartment of Quantitative Health Sciences, Cleveland Clinic, Cleveland, OH, USA.
Murat YildirimDepartment of Neurosciences, Cleveland Clinic, Cleveland, OH, USA; Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH, USA. Electronic address: yildirm2@ccf.org.
Mihriban KaraayvazDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA; Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH, USA. Electronic address: karaaym@ccf.org.

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Amar Desai · 1987 to 2026
$142.3M
Supplement - Discovering the role of YES1 in triple negative breast cancerR01CA257502 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI KERI, RUTH A. · 2021 to 2025
$2.8M
Developing next generation multiphoton systems to reveal cortico-thalamic interactions underlying short-term memory in behaving miceR00EB027706 · NIBIB · CLEVELAND CLINIC LERNER COM-CWRU · PI YILDIRIM, MURAT · 2022 to 2024
$747k
NCI NIH HHS P30 CA043703NCI NIH HHS R01 CA257502NIBIB NIH HHS R00 EB027706
6 · The paper itself

Abstract

Triple-negative breast cancer (TNBC) exhibits substantial clinical heterogeneity, with some patients experiencing early recurrence and poor survival despite similar clinicopathologic features. Here, we investigated whether quantitative assessment of intratumoral collagen architecture and composition could improve risk stratification in TNBC. We analyzed a retrospective cohort of 79 TNBC tumors assembled into tissue microarrays using a multimodal computational pathology framework integrating Masson Trichrome staining with COL1 and COL3 immunohistochemistry. Collagen architecture was quantified using fiber-based image analysis and unsupervised clustering, while collagen composition was assessed using a normalized COL3:COL1 ratio. Unsupervised analysis identified four distinct collagen architectural states, which were consolidated into low-risk and high-risk groups based on recurrence patterns. High-risk collagen architecture was associated with shorter recurrence-free interval (log-rank p = 0.025; restricted mean survival time difference=10.1 months). Independently, a higher COL3:COL1 ratio was associated with improved overall survival (log-rank p = 0.042; restricted mean survival time difference=9.4 months). Integration of collagen architecture and composition further refined risk stratification, with patients demonstrating high-risk architecture and low COL3:COL1 ratios exhibiting the poorest outcomes. Notably, collagen-defined phenotypes identified patients with divergent outcomes not readily apparent from tumor stage alone. Together, these findings demonstrate that quantitative assessment of intratumoral collagen architecture and composition provides clinically meaningful prognostic information in TNBC and supports extracellular matrix phenotyping as a practical computational pathology approach for refining risk assessment.

Indexed as

Collagen remodelingComputational pathologyExtracellular matrixRisk stratificationTriple-negative breast cancer

Identifiers

PMID42731351
PMCPMC13587055

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.