Evidence map›Paper›PMID 42722877›Full record

ArticleNature plants2026

Decoding the landscape of cell-type-specific co-expressed transcription factors in soybean.

Sandra B Thibivilliers, Sergio Alan Cervantes-Pérez, Eric J Y Yang, Yaohua Li, Sahand Amini, Julie M Pelletier, Ian Meyer, Hengping Xu, Sutton Tennant, Chandler M Sprueill and 9 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Sandra B ThibivilliersDivision of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA.
Sergio Alan Cervantes-PérezDepartment of Agronomy and Horticulture, University of Nebraska, Lincoln, NE, USA.ORCID http://orcid.org/0000-0002-8654-8784
Eric J Y YangDivision of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA.
Yaohua LiDivision of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA.
Sahand AminiDivision of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA.
Julie M PelletierDepartment of Plant Biology, University of California, Davis, Davis, CA, USA.
Ian MeyerDepartment of Agronomy and Horticulture, University of Nebraska, Lincoln, NE, USA.
Hengping XuDivision of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA.
Sutton TennantDivision of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA.
Chandler M SprueillDepartment of Biology, Reed College, Portland, OR, USA.ORCID http://orcid.org/0000-0001-6696-9015
Andrew D FarmerNational Center for Genome Resources, Santa Fe, NM, USA.ORCID http://orcid.org/0000-0002-4224-2433
Jeremy E CoateDepartment of Biology, Reed College, Portland, OR, USA.
Hilde NelissenDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-7494-1290
Olivier C MartinUniversities of Paris-Saclay, Paris-Cité and Evry, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay, Gif-sur-Yvette, France.ORCID http://orcid.org/0000-0002-5295-5963
Erik J AmézquitaDivision of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA.
Robert B GoldbergDepartment of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, CA, USA.
John J HaradaDepartment of Plant Biology, University of California, Davis, Davis, CA, USA.
Jason NicholsSyngenta Seeds, Durham, NC, USA.
Marc LibaultDivision of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA. libaultm@missouri.edu.ORCID http://orcid.org/0000-0001-7419-9129

Funding

National Science Foundation (NSF) 1854326National Science Foundation (NSF) 2127485
6 · The paper itself

Abstract

Soybean (Glycine max) is an essential source of protein and oil with high nutritional value for human and animal consumption. To enhance our understanding of soybean biology, it is essential to have accurate information regarding the expression of each of its protein-coding genes. Here, we present Tabula Glycine max, a soybean single-cell resolution transcriptome atlas. This atlas comprises single-nucleus RNA-sequencing data from ten different G. max organs and morphological structures constituting the entire soybean plant. These nuclei are grouped into 156 different clusters based on their transcriptomic profiles. The breadth of various organs, tissues and cell types represented in Tabula Glycine max reveals that the pattern of co-expressed transcription factor genes is sufficient to define most cell types based on their function and organ of origin. Defining cell-type-specific co-expressed transcription factor genes offers a new perspective to engineer cell-type-specific programmes and enhance the biology of unique soybean cell types. This cellular resolution and breadth make the Tabula Glycine max an exceptional resource for the plant and soybean communities.

Identifiers

PMID42722877

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.